IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
799	 56.29	+1	907574..908575	-	333	74311415	ybjU	SSON_0856	-	L-threonine aldolase
800	 54.10	0	908612..910330	-	572	74311416	poxB	SSON_0857	-	pyruvate dehydrogenase
801	 55.21	0	910463..911431	-	322	74311417	-	SSON_0858	-	HCP oxidoreductase, NADH-dependent
802	 54.45	0	911443..913095	-	550	161986562	ybjW	SSON_0859	-	hydroxylamine reductase
803	 48.21	0	913239..914186	-	315	74311419	ybjE	SSON_0860	-	putative surface protein
804	 54.37	0	915182..915685	+	167	74311420	-	SSON_0862	-	IS1 ORF
805	 53.16	0	915971..917629	+	552	74311421	ybjD	SSON_0863	-	hypothetical protein
806	 49.85	0	917626..918618	-	330	74311422	ybjX	SSON_0864	-	putative enzyme
807	 53.58	0	918733..919848	+	371	161986561	-	SSON_0865	-	macrolide transporter subunit MacA
808	 53.88	0	919845..921791	+	648	74311424	ybjZ	SSON_0866	-	macrolide transporter ATP-binding /permease protein
809	 48.00	0	921864..922088	-	74	74311425	cspD	SSON_0867	-	stationary phase/starvation inducible regulatory protein CspD
810	 49.56	0	922493..923731	+	412	74311426	-	SSON_0868	-	putative integrase
811	 54.17	0	924285..924788	+	167	74311427	-	SSON_0869	-	IS1 ORF
812	 47.06	-1	925138..925953	+	271	74311428	-	SSON_0870	-	hypothetical protein
813	 41.67	-2	926496..926795	+	99	74311429	-	SSON_0871	-	hypothetical protein
814	 51.55	0	926792..928279	+	495