IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
786	 52.15	0	894789..895277	+	162	74311402	ybjO	SSON_0843	-	hypothetical protein
787	 54.52	0	895318..896445	+	375	74311403	rumB	SSON_0844	-	23S rRNA methyluridine methyltransferase
788	 45.49	-1	896620..897351	-	243	74311404	artJ	SSON_0845	-	arginine 3rd transport system periplasmic binding protein
789	 52.62	0	897644..898312	-	222	74311405	artM	SSON_0846	-	arginine transporter permease subunit ArtM
790	 54.95	0	898312..899028	-	238	74311406	artQ	SSON_0847	-	arginine transporter permease subunit ArtQ
791	 50.14	0	899035..899766	-	243	74311407	artI	SSON_0848	-	arginine 3rd transport system periplasmic binding protein
792	 52.54	0	899784..900512	-	242	74311408	artP	SSON_0849	-	arginine transporter ATP-binding subunit
793	 53.68	0	900730..901245	-	171	74311409	ybjP	SSON_0850	-	putative lipoprotein
794	 33.22	-2	901894..903663	+	589	74311410	-	SSON_0851	-	hypothetical protein
795	 54.01	0	903874..904197	+	107	74311411	-	SSON_0852	-	hypothetical protein
796	 56.08	+1	904194..905024	+	276	74311412	-	SSON_0853	-	putative regulator
797	 53.62	0	905021..906070	-	349	74311413	-	SSON_0854	-	putative nucleotide di-P-sugar epimerase or dehydratase
798	 54.86	0	906133..907563	-	476	74311414	ybjT	SSON_0855	-	putative dTDP-glucose enzyme
799	 56.29	+1	907574..908575	-	333	74311415	ybjU	SSON_0856	-	L-threonine aldolase
800	 54.10	0	908612..910330	-	572	74311416	poxB	SSON_0857	-	pyruvate dehydrogenase
801	 55.21	0	910463..911431	-	322