version 1.0
Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 785 54.02 0 893884..894729 + 281 74311401 potI SSON_0842 - putrescine ABC transporter membrane protein 786 52.15 0 894789..895277 + 162 74311402 ybjO SSON_0843 - hypothetical protein 787 54.52 0 895318..896445 + 375 74311403 rumB SSON_0844 - 23S rRNA methyluridine methyltransferase 788 45.49 -1 896620..897351 - 243 74311404 artJ SSON_0845 - arginine 3rd transport system periplasmic binding protein 789 52.62 0 897644..898312 - 222 74311405 artM SSON_0846 - arginine transporter permease subunit ArtM 790 54.95 0 898312..899028 - 238 74311406 artQ SSON_0847 - arginine transporter permease subunit ArtQ 791 50.14 0 899035..899766 - 243 74311407 artI SSON_0848 - arginine 3rd transport system periplasmic binding protein 792 52.54 0 899784..900512 - 242 74311408 artP SSON_0849 - arginine transporter ATP-binding subunit 793 53.68 0 900730..901245 - 171 74311409 ybjP SSON_0850 - putative lipoprotein 794 33.22 -2 901894..903663 + 589 74311410 - SSON_0851 - hypothetical protein 795 54.01 0 903874..904197 + 107 74311411 - SSON_0852 - hypothetical protein 796 56.08 +1 904194..905024 + 276 74311412 - SSON_0853 - putative regulator 797 53.62 0 905021..906070 - 349 74311413 - SSON_0854 - putative nucleotide di-P-sugar epimerase or dehydratase 798 54.86 0 906133..907563 - 476 74311414 ybjT SSON_0855 - putative dTDP-glucose enzyme 799 56.29 +1 907574..908575 - 333 74311415 ybjU SSON_0856 - L-threonine aldolase 800 54.10 0 908612..910330 - 572 74311416 poxB SSON_0857 - pyruvate dehydrogenase 801 55.21 0 910463..911431 - 322 74311417 - SSON_0858 - HCP oxidoreductase, NADH-dependent 802 54.45 0 911443..913095 - 550 161986562 ybjW SSON_0859 - hydroxylamine reductase 803 48.21 0 913239..914186 - 315 74311419 ybjE SSON_0860 - putative surface protein 804 54.37 0 915182..915685 + 167 74311420 - SSON_0862 - IS1 ORF 805 53.16 0 915971..917629 + 552 74311421 ybjD SSON_0863 - hypothetical protein 806 49.85 0 917626..918618 - 330 74311422 ybjX SSON_0864 - putative enzyme 807 53.58 0 918733..919848 + 371 161986561 - SSON_0865 - macrolide transporter subunit MacA 808 53.88 0 919845..921791 + 648 74311424 ybjZ SSON_0866 - macrolide transporter ATP-binding /permease protein 809 48.00 0 921864..922088 - 74 74311425 cspD SSON_0867 - stationary phase/starvation inducible regulatory protein CspD 810 49.56 0 922493..923731 + 412 74311426 - SSON_0868 - putative integrase 811 54.17 0 924285..924788 + 167 74311427 - SSON_0869 - IS1 ORF 812 47.06 -1 925138..925953 + 271 74311428 - SSON_0870 - hypothetical protein 813 41.67 -2 926496..926795 + 99 74311429 - SSON_0871 - hypothetical protein 814 51.55 0 926792..928279 + 495 74311430 - SSON_0872 - bacteriophage P4 DNA primase 815 46.20 -1 928381..928683 + 100 74311431 - SSON_0873 - IS600 ORF1 816 52.10 0 928824..929537 + 237 74311432 - SSON_0874 - IS600 ORF2 817 52.85 0 930165..930410 + 81 74311433 - SSON_0875 - hypothetical protein 818 58.63 +1 930407..930829 + 140 74311434 - SSON_0876 - putative single stranded DNA-binding protein 819 50.00 0 931489..932634 + 381 74311435 - SSON_0877 - putative protease/scaffold protein 820 48.88 0 932598..933356 + 252 74311436 - SSON_0878 - unknown protein encoded within prophage 821 55.28 0 933615..933860 + 81 74311437 - SSON_0879 - hypothetical protein 822 53.03 0 933947..935119 + 390 74311438 - SSON_0880 - IS21 ORF1 823 52.63 0 935119..935916 + 265 74311439 - SSON_0881 - IS21 ORF2 824 45.17 -1 936670..936990 + 106 74311440 clpS SSON_0882 - ATP-dependent Clp protease adaptor protein ClpS 825 52.79 0 937021..939297 + 758 74311441 clpA SSON_0883 - ATP-dependent Clp protease ATP-binding subunit 826 48.40 0 940044..940262 - 72 74311442 infA SSON_0885 - translation initiation factor IF-1 827 53.48 0 940547..941251 - 234 74311443 aat SSON_0886 - leucyl/phenylalanyl-tRNA--protein transferase 828 53.83 0 941293..943014 - 573 74311444 cydC SSON_0887 - cysteine/glutathione ABC transporter membrane/ATP-binding component 829 53.25 0 943015..944781 - 588 74311445 cydD SSON_0888 - cysteine/glutathione ABC transporter membrane/ATP-binding component 830 53.31 0 944904..945869 - 321 74311446 trxB SSON_0889 - thioredoxin reductase 831 47.27 -1 946414..946908 + 164 74311447 lrp SSON_0890 - leucine-responsive transcriptional regulator 832 53.96 0 947043..951110 + 1355 74311448 ftsK SSON_0891 - DNA translocase FtsK 833 50.73 0 951262..951876 + 204 74311449 lolA SSON_0892 - outer-membrane lipoprotein carrier protein 834 53.72 0 951887..953230 + 447 74311450 ycaJ SSON_0893 - recombination factor protein RarA 835 52.82 0 953321..954613 + 430 74311451 serS SSON_0894 - seryl-tRNA synthetase 836 52.59 0 954939..957296 + 785 74311452 dmsA SSON_0895 - anaerobic dimethyl sulfoxide reductase subunit A 837 51.94 0 957307..957924 + 205 74311453 dmsB SSON_0896 - anaerobic dimethyl sulfoxide reductase subunit B 838 56.02 +1 957926..958789 + 287 74311454 dmsC SSON_0897 - anaerobic dimethyl sulfoxide reductase subunit C 839 45.77 -1 958825..959451 - 208 74311455 ycaC SSON_0898 - hypothetical protein 840 51.87 0 959766..960914 + 382 74311456 ycaD SSON_0899 - MFS family transporter 841 54.37 0 963055..963558 + 167 74311457 - SSON_0901 - IS1 ORF 842 50.20 0 964609..965349 - 246 74311458 pflA SSON_0903 - pyruvate formate lyase-activating enzyme 1 843 51.16 0 965541..967823 - 760 74311459 pflB SSON_0904 - formate acetyltransferase 1 844 48.95 0 967878..968735 - 285 74311460 focA SSON_0905 - formate transporter 845 51.02 0 969141..970910 - 589 74311461 ycaO SSON_0906 - hypothetical protein 846 47.47 0 971031..971723 + 230 74311462 ycaP SSON_0907 - hypothetical protein 847 50.41 0 971922..973010 + 362 74311463 serC SSON_0908 - phosphoserine aminotransferase 848 50.55 0 973081..974364 + 427 74311464 aroA SSON_0909 - 3-phosphoshikimate 1-carboxyvinyltransferase 849 53.90 0 974490..975836 + 448 74311465 - SSON_0910 - IS4 orf 850 49.18 0 975948..976736 + 262 74311466 ycaL SSON_0911 - putative heat shock protein 851 53.36 0 976909..977592 + 227 74311467 cmk SSON_0912 - cytidylate kinase 852 50.96 0 977703..979376 + 557 74311468 rpsA SSON_0913 - 30S ribosomal protein S1 853 49.12 0 979536..979820 + 94 74311469 ihfB SSON_0914 - integration host factor subunit beta 854 49.76 0 980027..982291 + 754 161986560 ycaI SSON_0915 - hypothetical protein 855 50.77 0 982328..984076 + 582 74311471 msbA SSON_0916 - lipid transporter ATP-binding/permease protein 856 54.81 0 984073..985059 + 328 74311472 lpxK SSON_0917 - tetraacyldisaccharide 4'-kinase 857 52.15 0 985096..986328 + 410 74311473 ycaQ SSON_0918 - hypothetical protein 858 47.54 0 986380..986562 + 60 74311474 ycaR SSON_0919 - hypothetical protein 859 52.74 0 986559..987305 + 248 74311475 kdsB SSON_0920 - 3-deoxy-manno-octulosonate cytidylyltransferase 860 52.46 0 987459..988352 + 297 74311476 - SSON_0921 - hypothetical protein 861 52.31 0 988329..989108 - 259 74311477 ycbC SSON_0922 - hypothetical protein 862 51.78 0 989244..990029 + 261 74311478 smtA SSON_0923 - putative metallothionein SmtA 863 52.83 0 990026..991348 + 440 74311479 mukF SSON_0924 - condesin subunit F 864 52.36 0 991356..992033 + 225 74311480 mukE SSON_0925 - condesin subunit E 865 55.88 +1 992033..996493 + 1486 74311481 mukB SSON_0926 - cell division protein MukB 866 53.90 0 996638..997984 + 448 74311482 - SSON_0927 - IS4 orf 867 53.19 0 998192..1000039 + 615 74311483 ycbB SSON_0928 - hypothetical protein 868 49.73 0 1000220..1000768 + 182 74311484 ycbK SSON_0929 - hypothetical protein 869 51.54 0 1000795..1001442 + 215 74311485 ycbL SSON_0930 - hypothetical protein 870 52.23 0 1001664..1002854 - 396 74311486 aspC SSON_0931 - aromatic amino acid aminotransferase 871 47.84 0 1003039..1004127 - 362 74311487 ompF SSON_0932 - outer membrane protein F 872 52.89 0 1004729..1006129 - 466 74311488 asnC SSON_0933 - asparaginyl-tRNA synthetase 873 51.29 0 1006301..1007503 - 400 74311489 pncB SSON_0934 - nicotinate phosphoribosyltransferase 874 53.69 0 1007769..1010381 + 870 74311490 pepN SSON_0935 - aminopeptidase N 875 55.47 0 1010588..1011355 - 255 74311491 ssuB SSON_0936 - aliphatic sulfonates transport ATP-binding subunit 876 55.56 0 1011352..1012143 - 263 74311492 ssuC SSON_0937 - alkanesulfonate transporter permease subunit 877 52.29 0 1013299..1014258 - 319 161986559 ycbO SSON_0939 - alkanesulfonate transporter substrate-binding subunit 878 54.17 0 1014251..1014826 - 191 74311494 ycbP SSON_0940 - NAD(P)H-dependent FMN reductase 879 54.37 0 1015398..1015901 + 167 74311495 - SSON_0941 - IS1 ORF 880 43.48 -1 1015950..1016501 + 183 74311496 ycbQ SSON_0942 - putative fimbrial-like protein 881 45.16 -1 1016584..1017285 + 233 74311497 ycbR SSON_0943 - putative chaperone 882 48.55 0 1019900..1020970 + 356 74311498 - SSON_0945 - FimH-like protein 883 46.96 -1 1020982..1021524 + 180 74311499 - SSON_0946 - putative fimbrial-like protein 884 47.70 0 1021484..1022047 + 187 74311500 - SSON_0947 - putative fimbrial-like protein 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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