IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
771	 52.98	0	881746..882030	-	94	74311387	ybjH	SSON_0828	-	hypothetical protein
772	 46.39	-1	882116..882904	-	262	74311388	-	SSON_0829	-	hypothetical protein
773	 54.59	0	882931..884139	-	402	74311389	-	SSON_0830	-	putative DEOR-type transcriptional regulator
774	 51.02	0	884223..884759	+	178	74311390	-	SSON_0831	-	putative DEOR-type transcriptional regulator
775	 51.19	0	884934..886619	-	561	74311391	-	SSON_0832	-	hypothetical protein
776	 48.94	0	886889..887266	+	125	74311392	ybjM	SSON_0833	-	hypothetical protein
777	 44.96	-1	887296..887553	-	85	74311393	grxA	SSON_0834	-	glutaredoxin 1
778	 50.35	0	887713..888000	+	95	74311394	ybjC	SSON_0835	-	hypothetical protein
779	 52.42	0	887984..888706	+	240	74311395	mdaA	SSON_0836	-	nitroreductase A
780	 56.04	+1	888767..889669	+	300	74311396	rimK	SSON_0837	-	ribosomal protein S6 modification protein
781	 48.64	0	889757..890233	+	158	74311397	ybjN	SSON_0838	-	putative sensory transduction regulator
782	 50.76	0	890584..891696	+	370	74311398	potF	SSON_0839	-	putrescine ABC transporter periplasmic substrate-binding protein
783	 55.29	0	891791..892924	+	377	161986563	potG	SSON_0840	-	putrescine transporter ATP-binding subunit
784	 50.42	0	892934..893887	+	317	74311400	potH	SSON_0841	-	putrescine ABC transporter membrane protein
785	 54.02	0	893884..894729	+	281	74311401	potI	SSON_0842	-	putrescine ABC transporter membrane protein
786	 52.15	0	894789..895277	+	162