version 1.0
Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 743 54.06 0 843347..843814 + 155 74311359 - SSON_0796 - manganese transport regulator MntR 744 52.46 0 843811..844929 + 372 74311360 ybiR SSON_0797 - hypothetical protein 745 53.31 0 844988..845908 - 306 74311361 ybiS SSON_0798 - hypothetical protein 746 52.88 0 846127..847722 + 531 74311362 ybiT SSON_0799 - putative ATP-binding component of a transport system 747 55.16 0 847902..850265 - 787 74311363 - SSON_0800 - putative glucosidase 748 54.15 0 850280..851581 - 433 74311364 - SSON_0801 - putative hexuronate transporter 749 57.43 +1 851876..852979 + 367 74311365 - SSON_0802 - putative transcriptional regulator 750 55.69 0 852946..854211 - 421 74311366 ybiU SSON_0803 - hypothetical protein 751 46.81 -1 854363..855178 - 271 74311367 - SSON_0804 - hypothetical protein 752 54.75 0 855324..857756 - 810 74311368 ybiW SSON_0805 - putative formate acetyltransferase 753 53.72 0 857762..858688 - 308 74311369 ybiY SSON_0806 - putative pyruvate formate-lyase 2 activating enzyme 754 53.70 0 858792..859454 + 220 161986564 mipB SSON_0807 - fructose-6-phosphate aldolase 755 55.73 0 859633..860382 - 249 74311371 moeB SSON_0808 - molybdopterin biosynthesis protein MoeB 756 56.63 +1 860382..861617 - 411 74311372 moeA SSON_0809 - molybdopterin biosynthesis protein MoeA 757 56.42 +1 861821..862786 + 321 74311373 ybiK SSON_0810 - L-asparaginase 758 54.27 0 862806..864644 + 612 74311374 - SSON_0811 - glutathione transporter ATP-binding protein 759 52.50 0 864664..866202 + 512 74311375 - SSON_0812 - putative transport protein 760 53.53 0 866220..867140 + 306 74311376 - SSON_0813 - putative transport system permease protein 761 53.07 0 867143..868054 + 303 74311377 - SSON_0814 - putative transport system permease protein 762 54.37 0 869051..869554 + 167 74311378 - SSON_0816 - IS1 ORF 763 52.71 0 872248..873573 - 441 74311379 yliG SSON_0818 - hypothetical protein 764 48.44 0 873786..874169 + 127 74311380 bssR SSON_0819 - biofilm formation regulatory protein BssR 765 51.88 0 874280..875395 + 371 74311381 yliI SSON_0820 - putative dehydrogenase 766 53.37 0 875392..875970 - 192 74311382 yliJ SSON_0821 - putative transferase 767 46.20 -1 876440..876742 + 100 74311383 - SSON_0823 - IS600 ORF1 768 52.10 0 876883..877596 + 237 74311384 - SSON_0824 - IS600 ORF2 769 50.46 0 878781..879539 - 252 74311385 deoR SSON_0825 - DNA-binding transcriptional repressor DeoR 770 51.76 0 879597..880193 - 198 74311386 ybjG SSON_0826 - undecaprenyl pyrophosphate phosphatase 771 52.98 0 881746..882030 - 94 74311387 ybjH SSON_0828 - hypothetical protein 772 46.39 -1 882116..882904 - 262 74311388 - SSON_0829 - hypothetical protein 773 54.59 0 882931..884139 - 402 74311389 - SSON_0830 - putative DEOR-type transcriptional regulator 774 51.02 0 884223..884759 + 178 74311390 - SSON_0831 - putative DEOR-type transcriptional regulator 775 51.19 0 884934..886619 - 561 74311391 - SSON_0832 - hypothetical protein 776 48.94 0 886889..887266 + 125 74311392 ybjM SSON_0833 - hypothetical protein 777 44.96 -1 887296..887553 - 85 74311393 grxA SSON_0834 - glutaredoxin 1 778 50.35 0 887713..888000 + 95 74311394 ybjC SSON_0835 - hypothetical protein 779 52.42 0 887984..888706 + 240 74311395 mdaA SSON_0836 - nitroreductase A 780 56.04 +1 888767..889669 + 300 74311396 rimK SSON_0837 - ribosomal protein S6 modification protein 781 48.64 0 889757..890233 + 158 74311397 ybjN SSON_0838 - putative sensory transduction regulator 782 50.76 0 890584..891696 + 370 74311398 potF SSON_0839 - putrescine ABC transporter periplasmic substrate-binding protein 783 55.29 0 891791..892924 + 377 161986563 potG SSON_0840 - putrescine transporter ATP-binding subunit 784 50.42 0 892934..893887 + 317 74311400 potH SSON_0841 - putrescine ABC transporter membrane protein 785 54.02 0 893884..894729 + 281 74311401 potI SSON_0842 - putrescine ABC transporter membrane protein 786 52.15 0 894789..895277 + 162 74311402 ybjO SSON_0843 - hypothetical protein 787 54.52 0 895318..896445 + 375 74311403 rumB SSON_0844 - 23S rRNA methyluridine methyltransferase 788 45.49 -1 896620..897351 - 243 74311404 artJ SSON_0845 - arginine 3rd transport system periplasmic binding protein 789 52.62 0 897644..898312 - 222 74311405 artM SSON_0846 - arginine transporter permease subunit ArtM 790 54.95 0 898312..899028 - 238 74311406 artQ SSON_0847 - arginine transporter permease subunit ArtQ 791 50.14 0 899035..899766 - 243 74311407 artI SSON_0848 - arginine 3rd transport system periplasmic binding protein 792 52.54 0 899784..900512 - 242 74311408 artP SSON_0849 - arginine transporter ATP-binding subunit 793 53.68 0 900730..901245 - 171 74311409 ybjP SSON_0850 - putative lipoprotein 794 33.22 -2 901894..903663 + 589 74311410 - SSON_0851 - hypothetical protein 795 54.01 0 903874..904197 + 107 74311411 - SSON_0852 - hypothetical protein 796 56.08 +1 904194..905024 + 276 74311412 - SSON_0853 - putative regulator 797 53.62 0 905021..906070 - 349 74311413 - SSON_0854 - putative nucleotide di-P-sugar epimerase or dehydratase 798 54.86 0 906133..907563 - 476 74311414 ybjT SSON_0855 - putative dTDP-glucose enzyme 799 56.29 +1 907574..908575 - 333 74311415 ybjU SSON_0856 - L-threonine aldolase 800 54.10 0 908612..910330 - 572 74311416 poxB SSON_0857 - pyruvate dehydrogenase 801 55.21 0 910463..911431 - 322 74311417 - SSON_0858 - HCP oxidoreductase, NADH-dependent 802 54.45 0 911443..913095 - 550 161986562 ybjW SSON_0859 - hydroxylamine reductase 803 48.21 0 913239..914186 - 315 74311419 ybjE SSON_0860 - putative surface protein 804 54.37 0 915182..915685 + 167 74311420 - SSON_0862 - IS1 ORF 805 53.16 0 915971..917629 + 552 74311421 ybjD SSON_0863 - hypothetical protein 806 49.85 0 917626..918618 - 330 74311422 ybjX SSON_0864 - putative enzyme 807 53.58 0 918733..919848 + 371 161986561 - SSON_0865 - macrolide transporter subunit MacA 808 53.88 0 919845..921791 + 648 74311424 ybjZ SSON_0866 - macrolide transporter ATP-binding /permease protein 809 48.00 0 921864..922088 - 74 74311425 cspD SSON_0867 - stationary phase/starvation inducible regulatory protein CspD 810 49.56 0 922493..923731 + 412 74311426 - SSON_0868 - putative integrase 811 54.17 0 924285..924788 + 167 74311427 - SSON_0869 - IS1 ORF 812 47.06 -1 925138..925953 + 271 74311428 - SSON_0870 - hypothetical protein 813 41.67 -2 926496..926795 + 99 74311429 - SSON_0871 - hypothetical protein 814 51.55 0 926792..928279 + 495 74311430 - SSON_0872 - bacteriophage P4 DNA primase 815 46.20 -1 928381..928683 + 100 74311431 - SSON_0873 - IS600 ORF1 816 52.10 0 928824..929537 + 237 74311432 - SSON_0874 - IS600 ORF2 817 52.85 0 930165..930410 + 81 74311433 - SSON_0875 - hypothetical protein 818 58.63 +1 930407..930829 + 140 74311434 - SSON_0876 - putative single stranded DNA-binding protein 819 50.00 0 931489..932634 + 381 74311435 - SSON_0877 - putative protease/scaffold protein 820 48.88 0 932598..933356 + 252 74311436 - SSON_0878 - unknown protein encoded within prophage 821 55.28 0 933615..933860 + 81 74311437 - SSON_0879 - hypothetical protein 822 53.03 0 933947..935119 + 390 74311438 - SSON_0880 - IS21 ORF1 823 52.63 0 935119..935916 + 265 74311439 - SSON_0881 - IS21 ORF2 824 45.17 -1 936670..936990 + 106 74311440 clpS SSON_0882 - ATP-dependent Clp protease adaptor protein ClpS 825 52.79 0 937021..939297 + 758 74311441 clpA SSON_0883 - ATP-dependent Clp protease ATP-binding subunit 826 48.40 0 940044..940262 - 72 74311442 infA SSON_0885 - translation initiation factor IF-1 827 53.48 0 940547..941251 - 234 74311443 aat SSON_0886 - leucyl/phenylalanyl-tRNA--protein transferase 828 53.83 0 941293..943014 - 573 74311444 cydC SSON_0887 - cysteine/glutathione ABC transporter membrane/ATP-binding component 829 53.25 0 943015..944781 - 588 74311445 cydD SSON_0888 - cysteine/glutathione ABC transporter membrane/ATP-binding component 830 53.31 0 944904..945869 - 321 74311446 trxB SSON_0889 - thioredoxin reductase 831 47.27 -1 946414..946908 + 164 74311447 lrp SSON_0890 - leucine-responsive transcriptional regulator 832 53.96 0 947043..951110 + 1355 74311448 ftsK SSON_0891 - DNA translocase FtsK 833 50.73 0 951262..951876 + 204 74311449 lolA SSON_0892 - outer-membrane lipoprotein carrier protein 834 53.72 0 951887..953230 + 447 74311450 ycaJ SSON_0893 - recombination factor protein RarA 835 52.82 0 953321..954613 + 430 74311451 serS SSON_0894 - seryl-tRNA synthetase 836 52.59 0 954939..957296 + 785 74311452 dmsA SSON_0895 - anaerobic dimethyl sulfoxide reductase subunit A 837 51.94 0 957307..957924 + 205 74311453 dmsB SSON_0896 - anaerobic dimethyl sulfoxide reductase subunit B 838 56.02 +1 957926..958789 + 287 74311454 dmsC SSON_0897 - anaerobic dimethyl sulfoxide reductase subunit C 839 45.77 -1 958825..959451 - 208 74311455 ycaC SSON_0898 - hypothetical protein 840 51.87 0 959766..960914 + 382 74311456 ycaD SSON_0899 - MFS family transporter 841 54.37 0 963055..963558 + 167 74311457 - SSON_0901 - IS1 ORF 842 50.20 0 964609..965349 - 246 74311458 pflA SSON_0903 - pyruvate formate lyase-activating enzyme 1 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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