IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
739	 49.01	0	838572..839075	-	167	74311355	dps	SSON_0792	-	DNA starvation/stationary phase protection protein Dps
740	 53.60	0	839374..840261	-	295	74311356	ybiF	SSON_0793	-	threonine and homoserine efflux system
741	 51.55	0	840614..841129	+	171	74311357	ompX	SSON_0794	-	outer membrane protein X
742	 48.48	0	841178..842761	-	527	74311358	ybiP	SSON_0795	-	putative enzyme
743	 54.06	0	843347..843814	+	155	74311359	-	SSON_0796	-	manganese transport regulator MntR
744	 52.46	0	843811..844929	+	372	74311360	ybiR	SSON_0797	-	hypothetical protein
745	 53.31	0	844988..845908	-	306	74311361	ybiS	SSON_0798	-	hypothetical protein
746	 52.88	0	846127..847722	+	531	74311362	ybiT	SSON_0799	-	putative ATP-binding component of a transport system
747	 55.16	0	847902..850265	-	787	74311363	-	SSON_0800	-	putative glucosidase
748	 54.15	0	850280..851581	-	433	74311364	-	SSON_0801	-	putative hexuronate transporter
749	 57.43	+1	851876..852979	+	367	74311365	-	SSON_0802	-	putative transcriptional regulator
750	 55.69	0	852946..854211	-	421	74311366	ybiU	SSON_0803	-	hypothetical protein
751	 46.81	-1	854363..855178	-	271	74311367	-	SSON_0804	-	hypothetical protein
752	 54.75	0	855324..857756	-	810	74311368	ybiW	SSON_0805	-	putative formate acetyltransferase
753	 53.72	0	857762..858688	-	308	74311369	ybiY	SSON_0806	-	putative pyruvate formate-lyase 2 activating enzyme
754	 53.70	0	858792..859454	+	220