IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
733	 46.42	-1	832104..832508	-	134	74311349	ybiM	SSON_0786	-	hypothetical protein
734	 53.57	0	832559..833566	+	335	74311350	ybiN	SSON_0787	-	putative SAM-dependent methyltransferase
735	 53.41	0	833563..835788	-	741	74311351	ybiO	SSON_0788	-	hypothetical protein
736	 53.94	0	835905..836627	-	240	74311352	glnQ	SSON_0789	-	glutamine ABC transporter ATP-binding protein
737	 53.33	0	836624..837283	-	219	74311353	glnP	SSON_0790	-	glutamine ABC transporter permease protein
738	 48.59	0	837422..838168	-	248	74311354	glnH	SSON_0791	-	glutamine ABC transporter periplasmic protein
739	 49.01	0	838572..839075	-	167	74311355	dps	SSON_0792	-	DNA starvation/stationary phase protection protein Dps
740	 53.60	0	839374..840261	-	295	74311356	ybiF	SSON_0793	-	threonine and homoserine efflux system
741	 51.55	0	840614..841129	+	171	74311357	ompX	SSON_0794	-	outer membrane protein X
742	 48.48	0	841178..842761	-	527	74311358	ybiP	SSON_0795	-	putative enzyme
743	 54.06	0	843347..843814	+	155	74311359	-	SSON_0796	-	manganese transport regulator MntR
744	 52.46	0	843811..844929	+	372	74311360	ybiR	SSON_0797	-	hypothetical protein
745	 53.31	0	844988..845908	-	306	74311361	ybiS	SSON_0798	-	hypothetical protein
746	 52.88	0	846127..847722	+	531	74311362	ybiT	SSON_0799	-	putative ATP-binding component of a transport system
747	 55.16	0	847902..850265	-	787	74311363	-	SSON_0800	-	putative glucosidase
748	 54.15	0	850280..851581	-	433