IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
676	 52.29	0	767484..767789	-	101	74311292	-	SSON_0727	-	putative bacteriophage protein
677	 48.72	0	768804..768959	+	51	74311293	-	SSON_0728	-	hypothetical protein
678	 46.20	-1	769036..769338	+	100	74311294	-	SSON_0729	-	IS600 ORF1
679	 54.64	0	769686..770525	-	279	74311295	-	SSON_0730	-	IS911 ORF2
680	 57.81	+1	771491..772687	-	398	74311296	-	SSON_0731	-	ISSfl2 ORF
681	 55.19	0	773134..774039	-	301	161986566	-	SSON_0732	-	insertion element IS2 transposase InsD
682	 48.80	0	774476..774973	+	165	74311298	-	SSON_0733	-	lysozyme-like protein
683	 52.65	0	774970..775440	+	156	74311299	-	SSON_0734	-	endopeptidase
684	 51.24	0	776236..777000	+	254	74311300	-	SSON_0735	-	putative bacteriophage protein
685	 48.59	0	776933..778354	+	473	74311301	-	SSON_0736	-	putative bacteriophage protein
686	 54.57	0	778738..779820	+	360	74311302	-	SSON_0737	-	putative bacteriophage protein
687	 53.81	0	780458..781678	+	406	74311303	-	SSON_0738	-	putative bacteriophage protein
688	 53.25	0	781682..782188	+	168	74311304	-	SSON_0739	-	putative bacteriophage protein
689	 54.37	0	782453..782956	+	167	74311305	-	SSON_0740	-	IS1 ORF
690	 54.52	0	783379..784374	+	331	74311306	ybhE	SSON_0741	-	6-phosphogluconolactonase
691	 44.84	-1	784415..785431	-	338	74311307	ybhD	SSON_0742	-	pu