IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
655	 49.61	0	746953..747333	-	126	74311271	-	SSON_0705	-	putative homeobox protein
656	 51.47	0	747649..748701	+	350	74311272	aroG	SSON_0706	-	phospho-2-dehydro-3-deoxyheptonate aldolase
657	 51.26	0	748860..749612	-	250	74311273	gpmA	SSON_0707	-	phosphoglyceromutase 1
658	 55.52	0	749815..750855	-	346	74311274	galM	SSON_0708	-	aldose 1-epimerase
659	 52.83	0	750849..751997	-	382	74311275	galK	SSON_0709	-	galactokinase
660	 55.40	0	752001..753047	-	348	74311276	galT	SSON_0710	-	galactose-1-phosphate uridylyltransferase
661	 54.28	0	753057..754073	-	338	74311277	galE	SSON_0711	-	UDP-galactose-4-epimerase
662	 52.48	0	754334..755806	-	490	74311278	modF	SSON_0712	-	putative molybdenum transport ATP-binding protein ModF
663	 52.60	0	755874..756662	-	262	74311279	modE	SSON_0713	-	DNA-binding transcriptional regulator ModE
664	 41.33	-2	756791..756940	+	49	74311280	-	SSON_0714	-	hypothetical protein
665	 50.90	0	757106..757879	+	257	74311281	modA	SSON_0715	-	molybdate transporter periplasmic protein
666	 54.20	0	757879..758568	+	229	74311282	modB	SSON_0716	-	molybdate ABC transporter permease protein
667	 53.64	0	758571..759629	+	352	74311283	modC	SSON_0717	-	molybdate transporter ATP-binding protein
668	 46.53	-1	760456..760758	+	100	74311284	-	SSON_0718	-	IS600 ORF1
669	 52.10	0	760899..761612	+	237	74311285	-	SSON_0719	-	IS600 ORF2
670	 39.58	-2	762001..762288	-	95