IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
651	 53.03	0	742950..744122	+	390	74311267	-	SSON_0701	-	IS21 ORF1
652	 52.63	0	744122..744919	+	265	74311268	-	SSON_0702	-	IS21 ORF2
653	 48.06	0	745182..745901	+	239	74311269	pnuC	SSON_0703	-	required for NMN transport
654	 53.08	0	745898..746839	-	313	74311270	ybgR	SSON_0704	-	zinc transporter ZitB
655	 49.61	0	746953..747333	-	126	74311271	-	SSON_0705	-	putative homeobox protein
656	 51.47	0	747649..748701	+	350	74311272	aroG	SSON_0706	-	phospho-2-dehydro-3-deoxyheptonate aldolase
657	 51.26	0	748860..749612	-	250	74311273	gpmA	SSON_0707	-	phosphoglyceromutase 1
658	 55.52	0	749815..750855	-	346	74311274	galM	SSON_0708	-	aldose 1-epimerase
659	 52.83	0	750849..751997	-	382	74311275	galK	SSON_0709	-	galactokinase
660	 55.40	0	752001..753047	-	348	74311276	galT	SSON_0710	-	galactose-1-phosphate uridylyltransferase
661	 54.28	0	753057..754073	-	338	74311277	galE	SSON_0711	-	UDP-galactose-4-epimerase
662	 52.48	0	754334..755806	-	490	74311278	modF	SSON_0712	-	putative molybdenum transport ATP-binding protein ModF
663	 52.60	0	755874..756662	-	262	74311279	modE	SSON_0713	-	DNA-binding transcriptional regulator ModE
664	 41.33	-2	756791..756940	+	49	74311280	-	SSON_0714	-	hypothetical protein
665	 50.90	0	757106..757879	+	257	74311281	modA	SSON_0715	-	molybdate transporter periplasmic protein
666	 54.20	0	757879..758568	+	229	74311282	modB	SSON_0716	-	molybdate ABC transporter permease protein
667	 53.64	0	758571..759629	+	352	74311283	modC	SSON_0717	-	molybdate transporter ATP-binding protein
668	 46.53	-1	760456..760758	+	100	74311284	-	SSON_0718	-	IS600 ORF1
669	 52.10	0	760899..761612	+	237	74311285	-	SSON_0719	-	IS600 ORF2
670	 39.58	-2	762001..762288	-	95	74311286	rem	SSON_0720	-	hypothetical protein
671	 48.62	0	762921..763607	-	228	74311287	-	SSON_0721	-	hypothetical protein
672	 45.66	-1	763755..764111	-	118	74311288	-	SSON_0722	-	putative bacteriophage protein
673	 54.62	0	764606..765352	-	248	74311289	-	SSON_0723	-	putative replication protein
674	 46.20	-1	766100..766402	+	100	74311290	-	SSON_0725	-	IS600 ORF1
675	 51.96	0	766543..767256	+	237	74311291	-	SSON_0726	-	IS600 ORF2
676	 52.29	0	767484..767789	-	101	74311292	-	SSON_0727	-	putative bacteriophage protein
677	 48.72	0	768804..768959	+	51	74311293	-	SSON_0728	-	hypothetical protein
678	 46.20	-1	769036..769338	+	100	74311294	-	SSON_0729	-	IS600 ORF1
679	 54.64	0	769686..770525	-	279	74311295	-	SSON_0730	-	IS911 ORF2
680	 57.81	+1	771491..772687	-	398	74311296	-	SSON_0731	-	ISSfl2 ORF
681	 55.19	0	773134..774039	-	301	161986566	-	SSON_0732	-	insertion element IS2 transposase InsD
682	 48.80	0	774476..774973	+	165	74311298	-	SSON_0733	-	lysozyme-like protein
683	 52.65	0	774970..775440	+	156	74311299	-	SSON_0734	-	endopeptidase
684	 51.24	0	776236..777000	+	254	74311300	-	SSON_0735	-	putative bacteriophage protein
685	 48.59	0	776933..778354	+	473	74311301	-	SSON_0736	-	putative bacteriophage protein
686	 54.57	0	778738..779820	+	360	74311302	-	SSON_0737	-	putative bacteriophage protein
687	 53.81	0	780458..781678	+	406	74311303	-	SSON_0738	-	putative bacteriophage protein
688	 53.25	0	781682..782188	+	168	74311304	-	SSON_0739	-	putative bacteriophage protein
689	 54.37	0	782453..782956	+	167	74311305	-	SSON_0740	-	IS1 ORF
690	 54.52	0	783379..784374	+	331	74311306	ybhE	SSON_0741	-	6-phosphogluconolactonase
691	 44.84	-1	784415..785431	-	338	74311307	ybhD	SSON_0742	-	putative transcriptional regulator LYSR-type
692	 54.56	0	785584..786087	-	167	74311308	-	SSON_0743	-	IS1 ORF
693	 52.18	0	786323..788503	+	726	74311309	ybhJ	SSON_0744	-	putative enzyme
694	 53.43	0	788737..790020	-	427	74311310	ybhC	SSON_0745	-	putative pectinesterase
695	 45.02	-1	790155..790967	-	270	74311311	intE	SSON_0746	-	putative integrase fragment
696	 52.10	0	790995..791708	-	237	74311312	-	SSON_0747	-	IS600 ORF2
697	 46.20	-1	791849..792151	-	100	74311313	-	SSON_0748	-	IS600 ORF1
698	 53.43	0	792167..793420	+	417	74311314	-	SSON_0749	-	putative tail fiber protein
699	 53.37	0	793371..793994	+	207	74311315	-	SSON_0750	-	putative tail component of prophage
700	 50.17	0	794174..795937	-	587	74311316	ipaH_1	SSON_0751	-	invasion plasmid antigen
701	 52.41	0	796519..796995	-	158	74311317	ybhB	SSON_0752	-	putative kinase inhibitor protein
702	 56.20	+1	797054..798343	-	429	74311318	bioA	SSON_0753	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
703	 55.14	0	798430..799470	+	346	74311319	bioB	SSON_0754	-	biotin synthesis
704	 58.53	+1	799467..800621	+	384	74311320	bioF	SSON_0755	-	8-amino-7-oxononanoate synthase
705	 56.48	+1	800608..801363	+	251	74311321	bioC	SSON_0756	-	biotin biosynthesis protein BioC
706	 53.69	0	801356..802033	+	225	74311322	bioD	SSON_0757	-	dithiobiotin synthetase
707	 53.31	0	802612..804633	+	673	74311323	uvrB	SSON_0758	-	excinuclease ABC subunit B
708	 51.60	0	804825..805733	-	302	74311324	ybhK	SSON_0759	-	putative structural protein
709	 53.94	0	806130..807119	+	329	74311325	moaA	SSON_0760	-	molybdenum cofactor biosynthesis protein A
710	 52.44	0	807141..807653	+	170	74311326	moaB	SSON_0761	-	molybdopterin biosynthesis, protein B
711	 56.17	+1	807656..808141	+	161	74311327	moaC	SSON_0762	-	molybdenum cofactor biosynthesis protein C
712	 56.91	+1	808134..808379	+	81	74311328	moaD	SSON_0763	-	molybdopterin synthase small subunit
713	 57.40	+1	808381..808833	+	150	74311329	MoaE	SSON_0764	-	molybdopterin synthase large subunit
714	 48.51	0	808970..809674	+	234	74311330	ybhL	SSON_0765	-	hypothetical protein
715	 42.58	-2	809879..810592	+	237	74311331	ybhM	SSON_0766	-	hypothetical protein
716	 54.91	0	811368..812609	-	413	74311332	ybhO	SSON_0768	-	cardiolipin synthase 2
717	 55.51	0	812606..813367	-	253	74311333	ybhP	SSON_0769	-	hypothetical protein
718	 54.50	0	813500..813910	+	136	74311334	ybhQ	SSON_0770	-	hypothetical protein
719	 52.39	0	813872..814978	-	368	74311335	ybhR	SSON_0771	-	hypothetical protein
720	 55.29	0	814989..816122	-	377	74311336	ybhS	SSON_0772	-	hypothetical protein
721	 54.92	0	816115..817851	-	578	74311337	ybhF	SSON_0773	-	putative ATP-binding component of a transport system
722	 57.56	+1	817844..818842	-	332	74311338	-	SSON_0774	-	hypothetical protein
723	 54.39	0	818842..819525	-	227	74311339	ybiH	SSON_0775	-	putative DNA-binding transcriptional regulator
724	 56.63	+1	819742..821106	+	454	74311340	rhlE	SSON_0776	-	ATP-dependent RNA helicase RhlE
725	 49.48	0	821338..821820	-	160	74311341	ybiA	SSON_0777	-	hypothetical protein
726	 54.25	0	821940..824090	+	716	74311342	dinG	SSON_0778	-	ATP-dependent DNA helicase DinG
727	 55.45	0	824118..825080	+	320	74311343	ybiB	SSON_0779	-	hypothetical protein
728	 55.52	0	825221..826306	+	361	74311344	ybiC	SSON_0780	-	hypothetical protein
729	 50.19	0	826535..826795	-	86	74311345	ybiJ	SSON_0781	-	hypothetical protein
730	 52.06	0	827060..827326	-	88	74311346	ybiI	SSON_0782	-	hypothetical protein
731	 53.54	0	827400..828077	-	225	161986565	ybiX	SSON_0783	-	putative hydroxylase
732	 53.90	0	830122..831468	-	448	74311348	-	SSON_0784	-	IS4 orf
733	 46.42	-1	832104..832508	-	134	74311349	ybiM	SSON_0786	-	hypothetical protein
734	 53.57	0	832559..833566	+	335	74311350	ybiN	SSON_0787	-	putative SAM-dependent methyltransferase
735	 53.41	0	833563..835788	-	741	74311351	ybiO	SSON_0788	-	hypothetical protein
736	 53.94	0	835905..836627	-	240	74311352	glnQ	SSON_0789	-	glutamine ABC transporter ATP-binding protein
737	 53.33	0	836624..837283	-	219	74311353	glnP	SSON_0790	-	glutamine ABC transporter permease protein
738	 48.59	0	837422..838168	-	248	74311354	glnH	SSON_0791	-	glutamine ABC transporter periplasmic protein
739	 49.01	0	838572..839075	-	167	74311355	dps	SSON_0792	-	DNA starvation/stationary phase protection protein Dps
740	 53.60	0	839374..840261	-	295	74311356	ybiF	SSON_0793	-	threonine and homoserine efflux system
741	 51.55	0	840614..841129	+	171	74311357	ompX	SSON_0794	-	outer membrane protein X
742	 48.48	0	841178..842761	-	527	74311358	ybiP	SSON_0795	-	putative enzyme
743	 54.06	0	843347..843814	+	155	74311359	-	SSON_0796	-	manganese transport regulator MntR
744	 52.46	0	843811..844929	+	372	74311360	ybiR	SSON_0797	-	hypothetical protein
745	 53.31	0	844988..845908	-	306	74311361	ybiS	SSON_0798	-	hypothetical protein
746	 52.88	0	846127..847722	+	531	74311362	ybiT	SSON_0799	-	putative ATP-binding component of a transport system
747	 55.16	0	847902..850265	-	787	74311363	-	SSON_0800	-	putative glucosidase
748	 54.15	0	850280..851581	-	433	74311364	-	SSON_0801	-	putative hexuronate transporter
749	 57.43	+1	851876..852979	+	367	74311365	-	SSON_0802	-	putative transcriptional regulator
750	 55.69	0	852946..854211	-	421	74311366	ybiU	SSON_0803	-	hypothetical protein
51.65	MEAN

4.20	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.