IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
648	 53.60	0	738139..739431	+	430	74311264	tolB	SSON_0692	-	translocation protein TolB
649	 51.34	0	739466..739987	+	173	74311265	pal	SSON_0693	-	peptidoglycan-associated outer membrane lipoprotein
650	 49.62	0	739997..740788	+	263	74311266	ybgF	SSON_0694	-	hypothetical protein
651	 53.03	0	742950..744122	+	390	74311267	-	SSON_0701	-	IS21 ORF1
652	 52.63	0	744122..744919	+	265	74311268	-	SSON_0702	-	IS21 ORF2
653	 48.06	0	745182..745901	+	239	74311269	pnuC	SSON_0703	-	required for NMN transport
654	 53.08	0	745898..746839	-	313	74311270	ybgR	SSON_0704	-	zinc transporter ZitB
655	 49.61	0	746953..747333	-	126	74311271	-	SSON_0705	-	putative homeobox protein
656	 51.47	0	747649..748701	+	350	74311272	aroG	SSON_0706	-	phospho-2-dehydro-3-deoxyheptonate aldolase
657	 51.26	0	748860..749612	-	250	74311273	gpmA	SSON_0707	-	phosphoglyceromutase 1
658	 55.52	0	749815..750855	-	346	74311274	galM	SSON_0708	-	aldose 1-epimerase
659	 52.83	0	750849..751997	-	382	74311275	galK	SSON_0709	-	galactokinase
660	 55.40	0	752001..753047	-	348	74311276	galT	SSON_0710	-	galactose-1-phosphate uridylyltransferase
661	 54.28	0	753057..754073	-	338	74311277	galE	SSON_0711	-	UDP-galactose-4-epimerase
662	 52.48	0	754334..755806	-	490	74311278	modF	SSON_0712	-	putative molybdenum transport ATP-binding protein ModF
663	 52.60	0	755874..756662	-	262