IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
639	 54.38	0	726492..728468	+	658	74311255	hrsA	SSON_0682	-	2-O-a-mannosyl-D-glycerate specific PTS transporten components IIABC
640	 40.35	-2	731067..731294	+	75	74311256	-	SSON_0684	-	hypothetical protein
641	 52.86	0	731887..733458	+	523	74311257	cydA	SSON_0685	-	cytochrome d terminal oxidase polypeptide subunit I
642	 53.60	0	733474..734613	+	379	74311258	cydB	SSON_0686	-	cytochrome d terminal oxidase polypeptide subunit II
643	 50.00	0	734741..735034	+	97	74311259	ybgE	SSON_0687	-	hypothetical protein
644	 49.63	0	735184..735588	+	134	74311260	ybgC	SSON_0688	-	acyl-CoA thioester hydrolase YbgC
645	 50.22	0	735585..736277	+	230	74311261	tolQ	SSON_0689	-	colicin uptake protein TolQ
646	 51.75	0	736281..736709	+	142	74311262	tolR	SSON_0690	-	colicin uptake protein TolR
647	 52.88	0	736774..738006	+	410	74311263	tolA	SSON_0691	-	cell envelope integrity inner membrane protein TolA
648	 53.60	0	738139..739431	+	430	74311264	tolB	SSON_0692	-	translocation protein TolB
649	 51.34	0	739466..739987	+	173	74311265	pal	SSON_0693	-	peptidoglycan-associated outer membrane lipoprotein
650	 49.62	0	739997..740788	+	263	74311266	ybgF	SSON_0694	-	hypothetical protein
651	 53.03	0	742950..744122	+	390	74311267	-	SSON_0701	-	IS21 ORF1
652	 52.63	0	744122..744919	+	265	74311268	-	SSON_0702	-	IS21 ORF2
653	 48.06	0	745182..745901	+	239	74311269	pnuC	SSON_0703	-	required for NMN transport
654	 53.08	0	745898..746839	-	313