IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
635	 55.75	0	722211..723428	+	405	74311251	sucB	SSON_0678	-	dihydrolipoamide acetyltransferase
636	 54.50	0	723522..724688	+	388	74311252	sucC	SSON_0679	-	succinyl-CoA synthetase subunit beta
637	 52.76	0	724688..725557	+	289	74311253	sucD	SSON_0680	-	succinyl-CoA synthetase subunit alpha
638	 47.99	0	725661..726383	-	240	74311254	farR	SSON_0681	-	DNA-binding transcriptional repressor MngR
639	 54.38	0	726492..728468	+	658	74311255	hrsA	SSON_0682	-	2-O-a-mannosyl-D-glycerate specific PTS transporten components IIABC
640	 40.35	-2	731067..731294	+	75	74311256	-	SSON_0684	-	hypothetical protein
641	 52.86	0	731887..733458	+	523	74311257	cydA	SSON_0685	-	cytochrome d terminal oxidase polypeptide subunit I
642	 53.60	0	733474..734613	+	379	74311258	cydB	SSON_0686	-	cytochrome d terminal oxidase polypeptide subunit II
643	 50.00	0	734741..735034	+	97	74311259	ybgE	SSON_0687	-	hypothetical protein
644	 49.63	0	735184..735588	+	134	74311260	ybgC	SSON_0688	-	acyl-CoA thioester hydrolase YbgC
645	 50.22	0	735585..736277	+	230	74311261	tolQ	SSON_0689	-	colicin uptake protein TolQ
646	 51.75	0	736281..736709	+	142	74311262	tolR	SSON_0690	-	colicin uptake protein TolR
647	 52.88	0	736774..738006	+	410	74311263	tolA	SSON_0691	-	cell envelope integrity inner membrane protein TolA
648	 53.60	0	738139..739431	+	430	74311264	tolB	SSON_0692	-	translocation protein TolB
649	 51.34	0	739466..739987	+	173	74311265	pal	SSON_0693	-	peptidoglycan-associated oute