IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
630	 50.86	0	716249..716596	+	115	74311246	sdhD	SSON_0673	-	succinate dehydrogenase cytochrome b556 small membrane subunit
631	 56.03	+1	716596..718362	+	588	74311247	sdhA	SSON_0674	-	succinate dehydrogenase flavoprotein subunit
632	 51.88	0	718378..719094	+	238	74311248	sdhB	SSON_0675	-	succinate dehydrogenase iron-sulfur subunit
633	 48.66	0	719153..719413	+	86	74311249	-	SSON_0676	-	hypothetical protein
634	 55.35	0	719395..722196	+	933	74311250	kgd	SSON_0677	-	alpha-ketoglutarate decarboxylase
635	 55.75	0	722211..723428	+	405	74311251	sucB	SSON_0678	-	dihydrolipoamide acetyltransferase
636	 54.50	0	723522..724688	+	388	74311252	sucC	SSON_0679	-	succinyl-CoA synthetase subunit beta
637	 52.76	0	724688..725557	+	289	74311253	sucD	SSON_0680	-	succinyl-CoA synthetase subunit alpha
638	 47.99	0	725661..726383	-	240	74311254	farR	SSON_0681	-	DNA-binding transcriptional repressor MngR
639	 54.38	0	726492..728468	+	658	74311255	hrsA	SSON_0682	-	2-O-a-mannosyl-D-glycerate specific PTS transporten components IIABC
640	 40.35	-2	731067..731294	+	75	74311256	-	SSON_0684	-	hypothetical protein
641	 52.86	0	731887..733458	+	523	74311257	cydA	SSON_0685	-	cytochrome d terminal oxidase polypeptide subunit I
642	 53.60	0	733474..734613	+	379	74311258	cydB	SSON_0686	-	cytochrome d terminal oxidase polypeptide subunit II
643	 50.00	0	734741..735034	+	97	74311259	ybgE	SSON_0687	-	hypothetical protein
644	 49.63	0	735184..735588	+	134	74311260	ybgC	SSON_0