IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
620	 57.53	+1	704277..704933	+	218	74311236	ybgJ	SSON_0662	-	putative carboxylase
621	 55.63	0	704927..705859	+	310	74311237	ybgK	SSON_0663	-	putative carboxylase
622	 56.87	+1	705849..706583	+	244	74311238	ybgL	SSON_0664	-	hypothetical protein
623	 52.15	0	706619..707410	+	263	74311239	nei	SSON_0665	-	endonuclease VIII
624	 55.68	0	707407..708498	-	363	74311240	abrB	SSON_0666	-	putative transport protein
625	 44.41	-1	708605..709696	-	363	74311241	ybgO	SSON_0667	-	hypothetical protein
626	 49.59	0	709663..710394	-	243	74311242	ybgP	SSON_0668	-	putative chaperone
627	 47.80	0	712918..713484	-	188	74311243	ybgD	SSON_0670	-	putative fimbrial-like protein
628	 50.23	0	713874..715157	-	427	74311244	gltA	SSON_0671	-	type II citrate synthase
629	 49.23	0	715866..716255	+	129	74311245	sdhC	SSON_0672	-	succinate dehydrogenase cytochrome b556 large membrane subunit
630	 50.86	0	716249..716596	+	115	74311246	sdhD	SSON_0673	-	succinate dehydrogenase cytochrome b556 small membrane subunit
631	 56.03	+1	716596..718362	+	588	74311247	sdhA	SSON_0674	-	succinate dehydrogenase flavoprotein subunit
632	 51.88	0	718378..719094	+	238	74311248	sdhB	SSON_0675	-	succinate dehydrogenase iron-sulfur subunit
633	 48.66	0	719153..719413	+	86	74311249	-	SSON_0676	-	hypothetical protein
634	 55.35	0	719395..722196	+	933	74311250	kgd	SSON_0677	-	alpha-ketoglutarate decarboxylase
635	 55.75	0	722211..723428	+	405