IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
608	 50.00	0	690073..690162	-	29	74311224	kdpF	SSON_0650	-	KdpF protein
609	 51.69	0	690475..690681	+	68	74311225	ybfA	SSON_0651	-	hypothetical protein
610	 65.09	+2	690923..691681	+	252	74311226	-	SSON_0652	-	hypothetical protein
611	 54.04	0	691896..693431	+	511	74311227	-	SSON_0653	-	putative transposase
612	 50.93	0	693448..694203	+	251	74311228	-	SSON_0654	-	putative transposase subunit
613	 59.08	+1	694244..697630	+	1128	74311229	rhsA	SSON_0655	-	rhsA protein in rhs element
614	 54.37	0	697875..698378	+	167	74311230	-	SSON_0656	-	IS1 ORF
615	 53.14	0	698504..699922	-	472	74311231	phrB	SSON_0657	-	deoxyribodipyrimidine photolyase
616	 50.20	0	699919..700428	-	169	74311232	ybgA	SSON_0658	-	hypothetical protein
617	 54.37	0	700957..701460	-	167	74311233	-	SSON_0659	-	IS1 ORF
618	 51.69	0	701759..703240	-	493	74311234	ybgH	SSON_0660	-	putative transport protein
619	 53.23	0	703511..704254	+	247	74311235	ybgI	SSON_0661	-	putative hydrolase-oxidase
620	 57.53	+1	704277..704933	+	218	74311236	ybgJ	SSON_0662	-	putative carboxylase
621	 55.63	0	704927..705859	+	310	74311237	ybgK	SSON_0663	-	putative carboxylase
622	 56.87	+1	705849..706583	+	244	74311238	ybgL	SSON_0664	-	hypothetical protein
623	 52.15	0	706619..707410	+	263	74311239	nei	SSON_0665	-	endonu