IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
601	 50.61	0	678193..679512	-	439	74311217	potE	SSON_0643	-	putrescine transporter
602	 49.20	0	679509..681707	-	732	74311218	speF	SSON_0644	-	ornithine decarboxylase
603	 57.08	+1	682397..683074	-	225	74311219	kdpE	SSON_0645	-	DNA-binding transcriptional activator KdpE
604	 57.91	+1	683071..685755	-	894	74311220	kdpD	SSON_0646	-	sensor protein KdpD
605	 54.80	0	685748..686320	-	190	74311221	kdpC	SSON_0647	-	potassium-transporting ATPase subunit C
606	 56.17	+1	686329..688377	-	682	74311222	kdpB	SSON_0648	-	potassium-transporting ATPase subunit B
607	 54.72	0	688400..690073	-	557	74311223	kdpA	SSON_0649	-	potassium-transporting ATPase subunit A
608	 50.00	0	690073..690162	-	29	74311224	kdpF	SSON_0650	-	KdpF protein
609	 51.69	0	690475..690681	+	68	74311225	ybfA	SSON_0651	-	hypothetical protein
610	 65.09	+2	690923..691681	+	252	74311226	-	SSON_0652	-	hypothetical protein
611	 54.04	0	691896..693431	+	511	74311227	-	SSON_0653	-	putative transposase
612	 50.93	0	693448..694203	+	251	74311228	-	SSON_0654	-	putative transposase subunit
613	 59.08	+1	694244..697630	+	1128	74311229	rhsA	SSON_0655	-	rhsA protein in rhs element
614	 54.37	0	697875..698378	+	167	74311230	-	SSON_0656	-	IS1 ORF
615	 53.14	0	698504..699922	-	472	74311231	phrB	SSON_0657	-	deoxyribodipyrimidine photolyase
616	 50.20	0	699919..700428	-	169