IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
598	 50.85	0	674977..675741	-	254	74311214	ybfF	SSON_0640	-	hypothetical protein
599	 49.63	0	675926..676471	+	181	74311215	seqA	SSON_0641	-	replication initiation regulator SeqA
600	 55.33	0	676497..678137	+	546	74311216	pgm	SSON_0642	-	phosphoglucomutase
601	 50.61	0	678193..679512	-	439	74311217	potE	SSON_0643	-	putrescine transporter
602	 49.20	0	679509..681707	-	732	74311218	speF	SSON_0644	-	ornithine decarboxylase
603	 57.08	+1	682397..683074	-	225	74311219	kdpE	SSON_0645	-	DNA-binding transcriptional activator KdpE
604	 57.91	+1	683071..685755	-	894	74311220	kdpD	SSON_0646	-	sensor protein KdpD
605	 54.80	0	685748..686320	-	190	74311221	kdpC	SSON_0647	-	potassium-transporting ATPase subunit C
606	 56.17	+1	686329..688377	-	682	74311222	kdpB	SSON_0648	-	potassium-transporting ATPase subunit B
607	 54.72	0	688400..690073	-	557	74311223	kdpA	SSON_0649	-	potassium-transporting ATPase subunit A
608	 50.00	0	690073..690162	-	29	74311224	kdpF	SSON_0650	-	KdpF protein
609	 51.69	0	690475..690681	+	68	74311225	ybfA	SSON_0651	-	hypothetical protein
610	 65.09	+2	690923..691681	+	252	74311226	-	SSON_0652	-	hypothetical protein
611	 54.04	0	691896..693431	+	511	74311227	-	SSON_0653	-	putative transposase
612	 50.93	0	693448..694203	+	251	74311228	-	SSON_0654	-	putative transposase subunit
613	 59.08	+1	694244..697630	+	1128