IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
588	 53.07	0	663255..664475	-	406	74311204	nagC	SSON_0630	-	transcriptional repressor of nag (N-acetylglucosamine) operon
589	 52.22	0	664484..665632	-	382	74311205	nagA	SSON_0631	-	N-acetylglucosamine-6-phosphate deacetylase
590	 48.31	0	665692..666492	-	266	74311206	nagB	SSON_0632	-	glucosamine-6-phosphate deaminase
591	 54.44	0	666825..668771	+	648	74311207	nagE	SSON_0633	-	N-acetyl glucosamine specific PTS system components IIABC
592	 53.09	0	669030..670694	+	554	74311208	glnS	SSON_0634	-	glutaminyl-tRNA synthetase
593	 51.28	0	671272..672441	+	389	74311209	ybfM	SSON_0635	-	hypothetical protein
594	 47.40	-1	672728..673054	+	108	74311210	ybfN	SSON_0636	-	hypothetical protein
595	 47.43	-1	673139..673585	-	148	74311211	fur	SSON_0637	-	ferric uptake regulator
596	 48.78	0	673874..674404	-	176	74311212	fldA	SSON_0638	-	flavodoxin FldA
597	 53.99	0	674544..674906	-	120	74311213	ybfE	SSON_0639	-	LexA regulated protein
598	 50.85	0	674977..675741	-	254	74311214	ybfF	SSON_0640	-	hypothetical protein
599	 49.63	0	675926..676471	+	181	74311215	seqA	SSON_0641	-	replication initiation regulator SeqA
600	 55.33	0	676497..678137	+	546	74311216	pgm	SSON_0642	-	phosphoglucomutase
601	 50.61	0	678193..679512	-	439	74311217	potE	SSON_0643	-	putrescine transporter
602	 49.20	0	679509..681707	-	732	74311218	speF	SSON_0644	-	ornithine decarboxylase
603	 57.08	+1	682397..683074	-	225