IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
577	 49.06	0	648130..649038	-	302	74311191	ybeJ	SSON_0609	-	glutamate and aspartate transporter subunit
578	 50.05	0	649493..651370	+	625	74311192	-	SSON_0610	-	hypothetical protein
579	 55.49	0	651448..652986	-	512	74311193	lnt	SSON_0611	-	apolipoprotein N-acyltransferase
580	 51.76	0	653011..653889	-	292	74311194	ybeX	SSON_0612	-	putative transport protein
581	 51.28	0	653979..654446	-	155	74311195	ybeY	SSON_0613	-	putative metalloprotease
582	 54.54	0	654443..655522	-	359	74311196	ybeZ	SSON_0614	-	putative ATP-binding protein in pho regulon
583	 54.04	0	655636..657060	-	474	74311197	yleA	SSON_0615	-	hypothetical protein
584	 56.46	+1	657206..658381	+	391	74311198	ubiF	SSON_0616	-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
585	 52.25	0	659617..661281	-	554	74311201	asnB	SSON_0627	-	asparagine synthetase B
586	 54.56	0	661750..662253	+	167	74311202	-	SSON_0628	-	IS1 ORF
587	 53.52	0	662455..663207	-	250	74311203	nagD	SSON_0629	-	UMP phosphatase
588	 53.07	0	663255..664475	-	406	74311204	nagC	SSON_0630	-	transcriptional repressor of nag (N-acetylglucosamine) operon
589	 52.22	0	664484..665632	-	382	74311205	nagA	SSON_0631	-	N-acetylglucosamine-6-phosphate deacetylase
590	 48.31	0	665692..666492	-	266	74311206	nagB	SSON_0632	-	glucosamine-6-phosphate deaminase
591	 54.44	0	666825..668771	+	648	74311207	nagE	SSON_0633	-	N-acetyl glucosamine specific PTS system components IIABC
592	 53.09	0	669030..670694	+	554