IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
569	 42.52	-2	640135..640689	-	184	74311183	ybeT	SSON_0601	-	hypothetical protein
570	 47.74	0	640791..641498	+	235	74311184	ybeU	SSON_0602	-	putative tRNA ligase
571	 47.73	0	641495..642946	+	483	74311185	ybeV	SSON_0603	-	hypothetical protein
572	 49.91	0	643006..644676	-	556	74311186	ybeW	SSON_0604	-	putative dnaK protein
573	 51.07	0	644768..645703	-	311	74311187	rihA	SSON_0605	-	ribonucleoside hydrolase 1
574	 51.93	0	645821..646546	-	241	74311188	gltL	SSON_0606	-	ATP-binding protein of glutamate/aspartate transport system
575	 49.93	0	646546..647220	-	224	74311189	gltK	SSON_0607	-	glutamate/aspartate transport system permease
576	 52.23	0	647220..647960	-	246	74311190	gltJ	SSON_0608	-	glutamate/aspartate transport system permease
577	 49.06	0	648130..649038	-	302	74311191	ybeJ	SSON_0609	-	glutamate and aspartate transporter subunit
578	 50.05	0	649493..651370	+	625	74311192	-	SSON_0610	-	hypothetical protein
579	 55.49	0	651448..652986	-	512	74311193	lnt	SSON_0611	-	apolipoprotein N-acyltransferase
580	 51.76	0	653011..653889	-	292	74311194	ybeX	SSON_0612	-	putative transport protein
581	 51.28	0	653979..654446	-	155	74311195	ybeY	SSON_0613	-	putative metalloprotease
582	 54.54	0	654443..655522	-	359	74311196	ybeZ	SSON_0614	-	putative ATP-binding protein in pho regulon
583	 54.04	0	655636..657060	-	474	74311197	yleA	SSON_0615	-	hypothetical protein
584	 56.46	+1	657206..658381	+	391