IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
560	 50.67	0	630666..631190	-	174	74311174	phpB	SSON_0592	-	PhpB
561	 50.16	0	631214..631855	-	213	74311175	nadD	SSON_0593	-	nicotinic acid mononucleotide adenylyltransferase
562	 51.94	0	631857..632888	-	343	74311176	holA	SSON_0594	-	DNA polymerase III subunit delta
563	 52.23	0	632888..633469	-	193	74311177	rlpB	SSON_0595	-	LPS-assembly lipoprotein RplB
564	 53.27	0	633484..636066	-	860	74311178	leuS	SSON_0596	-	leucyl-tRNA synthetase
565	 52.17	0	636301..636783	+	160	74311179	ybeL	SSON_0597	-	hypothetical protein
566	 46.85	-1	636853..637836	-	327	74311180	ybeQ	SSON_0598	-	hypothetical protein
567	 45.62	-1	637994..638701	+	235	74311181	ybeR	SSON_0599	-	hypothetical protein
568	 48.53	0	638698..640125	+	475	74311182	ybeS	SSON_0600	-	putative enzyme of polynucleotide modification
569	 42.52	-2	640135..640689	-	184	74311183	ybeT	SSON_0601	-	hypothetical protein
570	 47.74	0	640791..641498	+	235	74311184	ybeU	SSON_0602	-	putative tRNA ligase
571	 47.73	0	641495..642946	+	483	74311185	ybeV	SSON_0603	-	hypothetical protein
572	 49.91	0	643006..644676	-	556	74311186	ybeW	SSON_0604	-	putative dnaK protein
573	 51.07	0	644768..645703	-	311	74311187	rihA	SSON_0605	-	ribonucleoside hydrolase 1
574	 51.93	0	645821..646546	-	241	74311188	gltL	SSON_0606	-	ATP-binding protein of glutamate/aspartate transport system
575	 49.93	0	646546..647220	-	224