version 1.0
Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 556 51.93 0 626484..627596 - 370 74311170 mrdB SSON_0588 - cell wall shape-determining protein 557 52.73 0 627599..629500 - 633 74311171 mrdA SSON_0589 - penicillin-binding protein 2 558 58.55 +1 629531..629998 - 155 74311172 ybeA SSON_0590 - SPOUT methyltransferase superfamily protein 559 51.90 0 630002..630211 - 69 74311173 ybeB SSON_0591 - hypothetical protein 560 50.67 0 630666..631190 - 174 74311174 phpB SSON_0592 - PhpB 561 50.16 0 631214..631855 - 213 74311175 nadD SSON_0593 - nicotinic acid mononucleotide adenylyltransferase 562 51.94 0 631857..632888 - 343 74311176 holA SSON_0594 - DNA polymerase III subunit delta 563 52.23 0 632888..633469 - 193 74311177 rlpB SSON_0595 - LPS-assembly lipoprotein RplB 564 53.27 0 633484..636066 - 860 74311178 leuS SSON_0596 - leucyl-tRNA synthetase 565 52.17 0 636301..636783 + 160 74311179 ybeL SSON_0597 - hypothetical protein 566 46.85 -1 636853..637836 - 327 74311180 ybeQ SSON_0598 - hypothetical protein 567 45.62 -1 637994..638701 + 235 74311181 ybeR SSON_0599 - hypothetical protein 568 48.53 0 638698..640125 + 475 74311182 ybeS SSON_0600 - putative enzyme of polynucleotide modification 569 42.52 -2 640135..640689 - 184 74311183 ybeT SSON_0601 - hypothetical protein 570 47.74 0 640791..641498 + 235 74311184 ybeU SSON_0602 - putative tRNA ligase 571 47.73 0 641495..642946 + 483 74311185 ybeV SSON_0603 - hypothetical protein 572 49.91 0 643006..644676 - 556 74311186 ybeW SSON_0604 - putative dnaK protein 573 51.07 0 644768..645703 - 311 74311187 rihA SSON_0605 - ribonucleoside hydrolase 1 574 51.93 0 645821..646546 - 241 74311188 gltL SSON_0606 - ATP-binding protein of glutamate/aspartate transport system 575 49.93 0 646546..647220 - 224 74311189 gltK SSON_0607 - glutamate/aspartate transport system permease 576 52.23 0 647220..647960 - 246 74311190 gltJ SSON_0608 - glutamate/aspartate transport system permease 577 49.06 0 648130..649038 - 302 74311191 ybeJ SSON_0609 - glutamate and aspartate transporter subunit 578 50.05 0 649493..651370 + 625 74311192 - SSON_0610 - hypothetical protein 579 55.49 0 651448..652986 - 512 74311193 lnt SSON_0611 - apolipoprotein N-acyltransferase 580 51.76 0 653011..653889 - 292 74311194 ybeX SSON_0612 - putative transport protein 581 51.28 0 653979..654446 - 155 74311195 ybeY SSON_0613 - putative metalloprotease 582 54.54 0 654443..655522 - 359 74311196 ybeZ SSON_0614 - putative ATP-binding protein in pho regulon 583 54.04 0 655636..657060 - 474 74311197 yleA SSON_0615 - hypothetical protein 584 56.46 +1 657206..658381 + 391 74311198 ubiF SSON_0616 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 585 52.25 0 659617..661281 - 554 74311201 asnB SSON_0627 - asparagine synthetase B 586 54.56 0 661750..662253 + 167 74311202 - SSON_0628 - IS1 ORF 587 53.52 0 662455..663207 - 250 74311203 nagD SSON_0629 - UMP phosphatase 588 53.07 0 663255..664475 - 406 74311204 nagC SSON_0630 - transcriptional repressor of nag (N-acetylglucosamine) operon 589 52.22 0 664484..665632 - 382 74311205 nagA SSON_0631 - N-acetylglucosamine-6-phosphate deacetylase 590 48.31 0 665692..666492 - 266 74311206 nagB SSON_0632 - glucosamine-6-phosphate deaminase 591 54.44 0 666825..668771 + 648 74311207 nagE SSON_0633 - N-acetyl glucosamine specific PTS system components IIABC 592 53.09 0 669030..670694 + 554 74311208 glnS SSON_0634 - glutaminyl-tRNA synthetase 593 51.28 0 671272..672441 + 389 74311209 ybfM SSON_0635 - hypothetical protein 594 47.40 -1 672728..673054 + 108 74311210 ybfN SSON_0636 - hypothetical protein 595 47.43 -1 673139..673585 - 148 74311211 fur SSON_0637 - ferric uptake regulator 596 48.78 0 673874..674404 - 176 74311212 fldA SSON_0638 - flavodoxin FldA 597 53.99 0 674544..674906 - 120 74311213 ybfE SSON_0639 - LexA regulated protein 598 50.85 0 674977..675741 - 254 74311214 ybfF SSON_0640 - hypothetical protein 599 49.63 0 675926..676471 + 181 74311215 seqA SSON_0641 - replication initiation regulator SeqA 600 55.33 0 676497..678137 + 546 74311216 pgm SSON_0642 - phosphoglucomutase 601 50.61 0 678193..679512 - 439 74311217 potE SSON_0643 - putrescine transporter 602 49.20 0 679509..681707 - 732 74311218 speF SSON_0644 - ornithine decarboxylase 603 57.08 +1 682397..683074 - 225 74311219 kdpE SSON_0645 - DNA-binding transcriptional activator KdpE 604 57.91 +1 683071..685755 - 894 74311220 kdpD SSON_0646 - sensor protein KdpD 605 54.80 0 685748..686320 - 190 74311221 kdpC SSON_0647 - potassium-transporting ATPase subunit C 606 56.17 +1 686329..688377 - 682 74311222 kdpB SSON_0648 - potassium-transporting ATPase subunit B 607 54.72 0 688400..690073 - 557 74311223 kdpA SSON_0649 - potassium-transporting ATPase subunit A 608 50.00 0 690073..690162 - 29 74311224 kdpF SSON_0650 - KdpF protein 609 51.69 0 690475..690681 + 68 74311225 ybfA SSON_0651 - hypothetical protein 610 65.09 +2 690923..691681 + 252 74311226 - SSON_0652 - hypothetical protein 611 54.04 0 691896..693431 + 511 74311227 - SSON_0653 - putative transposase 612 50.93 0 693448..694203 + 251 74311228 - SSON_0654 - putative transposase subunit 613 59.08 +1 694244..697630 + 1128 74311229 rhsA SSON_0655 - rhsA protein in rhs element 614 54.37 0 697875..698378 + 167 74311230 - SSON_0656 - IS1 ORF 615 53.14 0 698504..699922 - 472 74311231 phrB SSON_0657 - deoxyribodipyrimidine photolyase 616 50.20 0 699919..700428 - 169 74311232 ybgA SSON_0658 - hypothetical protein 617 54.37 0 700957..701460 - 167 74311233 - SSON_0659 - IS1 ORF 618 51.69 0 701759..703240 - 493 74311234 ybgH SSON_0660 - putative transport protein 619 53.23 0 703511..704254 + 247 74311235 ybgI SSON_0661 - putative hydrolase-oxidase 620 57.53 +1 704277..704933 + 218 74311236 ybgJ SSON_0662 - putative carboxylase 621 55.63 0 704927..705859 + 310 74311237 ybgK SSON_0663 - putative carboxylase 622 56.87 +1 705849..706583 + 244 74311238 ybgL SSON_0664 - hypothetical protein 623 52.15 0 706619..707410 + 263 74311239 nei SSON_0665 - endonuclease VIII 624 55.68 0 707407..708498 - 363 74311240 abrB SSON_0666 - putative transport protein 625 44.41 -1 708605..709696 - 363 74311241 ybgO SSON_0667 - hypothetical protein 626 49.59 0 709663..710394 - 243 74311242 ybgP SSON_0668 - putative chaperone 627 47.80 0 712918..713484 - 188 74311243 ybgD SSON_0670 - putative fimbrial-like protein 628 50.23 0 713874..715157 - 427 74311244 gltA SSON_0671 - type II citrate synthase 629 49.23 0 715866..716255 + 129 74311245 sdhC SSON_0672 - succinate dehydrogenase cytochrome b556 large membrane subunit 630 50.86 0 716249..716596 + 115 74311246 sdhD SSON_0673 - succinate dehydrogenase cytochrome b556 small membrane subunit 631 56.03 +1 716596..718362 + 588 74311247 sdhA SSON_0674 - succinate dehydrogenase flavoprotein subunit 632 51.88 0 718378..719094 + 238 74311248 sdhB SSON_0675 - succinate dehydrogenase iron-sulfur subunit 633 48.66 0 719153..719413 + 86 74311249 - SSON_0676 - hypothetical protein 634 55.35 0 719395..722196 + 933 74311250 kgd SSON_0677 - alpha-ketoglutarate decarboxylase 635 55.75 0 722211..723428 + 405 74311251 sucB SSON_0678 - dihydrolipoamide acetyltransferase 636 54.50 0 723522..724688 + 388 74311252 sucC SSON_0679 - succinyl-CoA synthetase subunit beta 637 52.76 0 724688..725557 + 289 74311253 sucD SSON_0680 - succinyl-CoA synthetase subunit alpha 638 47.99 0 725661..726383 - 240 74311254 farR SSON_0681 - DNA-binding transcriptional repressor MngR 639 54.38 0 726492..728468 + 658 74311255 hrsA SSON_0682 - 2-O-a-mannosyl-D-glycerate specific PTS transporten components IIABC 640 40.35 -2 731067..731294 + 75 74311256 - SSON_0684 - hypothetical protein 641 52.86 0 731887..733458 + 523 74311257 cydA SSON_0685 - cytochrome d terminal oxidase polypeptide subunit I 642 53.60 0 733474..734613 + 379 74311258 cydB SSON_0686 - cytochrome d terminal oxidase polypeptide subunit II 643 50.00 0 734741..735034 + 97 74311259 ybgE SSON_0687 - hypothetical protein 644 49.63 0 735184..735588 + 134 74311260 ybgC SSON_0688 - acyl-CoA thioester hydrolase YbgC 645 50.22 0 735585..736277 + 230 74311261 tolQ SSON_0689 - colicin uptake protein TolQ 646 51.75 0 736281..736709 + 142 74311262 tolR SSON_0690 - colicin uptake protein TolR 647 52.88 0 736774..738006 + 410 74311263 tolA SSON_0691 - cell envelope integrity inner membrane protein TolA 648 53.60 0 738139..739431 + 430 74311264 tolB SSON_0692 - translocation protein TolB 649 51.34 0 739466..739987 + 173 74311265 pal SSON_0693 - peptidoglycan-associated outer membrane lipoprotein 650 49.62 0 739997..740788 + 263 74311266 ybgF SSON_0694 - hypothetical protein 651 53.03 0 742950..744122 + 390 74311267 - SSON_0701 - IS21 ORF1 652 52.63 0 744122..744919 + 265 74311268 - SSON_0702 - IS21 ORF2 653 48.06 0 745182..745901 + 239 74311269 pnuC SSON_0703 - required for NMN transport 654 53.08 0 745898..746839 - 313 74311270 ybgR SSON_0704 - zinc transporter ZitB 655 49.61 0 746953..747333 - 126 74311271 - SSON_0705 - putative homeobox protein 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0