IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
552	 47.66	0	622920..623561	-	213	161986567	lipB	SSON_0584	-	lipoyltransferase
553	 45.83	-1	623662..623925	-	87	74311167	ybeD	SSON_0585	-	hypothetical protein
554	 49.42	0	624035..625246	-	403	74311168	dacA	SSON_0586	-	D-alanyl-D-alanine carboxypeptidase fraction A
555	 57.67	+1	625385..626473	-	362	74311169	rlpA	SSON_0587	-	rare lipoprotein A
556	 51.93	0	626484..627596	-	370	74311170	mrdB	SSON_0588	-	cell wall shape-determining protein
557	 52.73	0	627599..629500	-	633	74311171	mrdA	SSON_0589	-	penicillin-binding protein 2
558	 58.55	+1	629531..629998	-	155	74311172	ybeA	SSON_0590	-	SPOUT methyltransferase superfamily protein
559	 51.90	0	630002..630211	-	69	74311173	ybeB	SSON_0591	-	hypothetical protein
560	 50.67	0	630666..631190	-	174	74311174	phpB	SSON_0592	-	PhpB
561	 50.16	0	631214..631855	-	213	74311175	nadD	SSON_0593	-	nicotinic acid mononucleotide adenylyltransferase
562	 51.94	0	631857..632888	-	343	74311176	holA	SSON_0594	-	DNA polymerase III subunit delta
563	 52.23	0	632888..633469	-	193	74311177	rlpB	SSON_0595	-	LPS-assembly lipoprotein RplB
564	 53.27	0	633484..636066	-	860	74311178	leuS	SSON_0596	-	leucyl-tRNA synthetase
565	 52.17	0	636301..636783	+	160	74311179	ybeL	SSON_0597	-	hypothetical protein
566	 46.85	-1	636853..637836	-	327	74311180	ybeQ	SSON_0598	-	hypothetical protein
567	 45.62	-1	637994..638701	+	235