IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 51.52	0	190..255	+	21	74310615	thrL	SSON_0001	-	thr operon leader peptide
2	 53.27	0	337..2799	+	820	74310616	thrA	SSON_0002	-	bifunctional aspartokinase I/homeserine dehydrogenase I
3	 56.38	+1	2801..3733	+	310	74310617	thrB	SSON_0003	-	homoserine kinase
4	 53.30	0	3734..5020	+	428	74310618	thrC	SSON_0004	-	threonine synthase
5	 54.21	0	5234..5530	+	98	74310619	-	SSON_0005	-	hypothetical protein
6	 49.03	0	5683..6459	-	258	74310620	yaaA	SSON_0006	-	hypothetical protein
7	 54.17	0	7446..7949	+	167	74310621	-	SSON_0007	-	IS1 ORF
8	 51.36	0	9014..9967	+	317	74310622	talB	SSON_0009	-	transaldolase B
9	 53.74	0	10082..10669	+	195	74310623	mogA	SSON_0010	-	molybdenum cofactor biosynthesis protein
10	 52.38	0	10704..11270	-	188	74310624	yaaH	SSON_0011	-	hypothetical protein
11	 50.28	0	11419..12132	-	237	74310625	-	SSON_0012	-	hypothetical protein
12	 48.15	0	12158..12562	-	134	74310626	yaaI	SSON_0013	-	hypothetical protein
13	 51.12	0	12939..14855	+	638	74310627	dnaK	SSON_0014	-	molecular chaperone DnaK
14	 54.91	0	14944..16074	+	376	74310628	dnaJ	SSON_0015	-	chaperone protein DnaJ
15	 51.43	0	16178..16387	-	69	74310629	gef	SSON_0016	-	Gef protein interferes with membrane function when in excess
16	 50.36	0	17028..17855	-	275	74310630	-	SSON_0017	-	putative transposase
17	 53.03