IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
539	 54.56	0	610717..611220	-	167	74311153	-	SSON_0570	-	IS1 ORF
540	 50.03	0	612015..613673	+	552	74311154	citA	SSON_0572	-	putative sensor-type protein
541	 50.37	0	613642..614322	+	226	74311155	citB	SSON_0573	-	two-component response regulator DpiA
542	 51.12	0	614363..615706	-	447	74311156	dcuC	SSON_0574	-	C4-dicarboxylate transporter DcuC
543	 54.37	0	615974..616477	+	167	74311157	-	SSON_0575	-	IS1 ORF
544	 48.86	0	616479..616961	+	160	74311158	crcA	SSON_0576	-	palmitoyl transferase for Lipid A
545	 43.81	-1	617136..617345	+	69	74311159	cspE	SSON_0577	-	cold shock protein CspE
546	 49.74	0	617399..617782	-	127	74311160	crcB	SSON_0578	-	hypothetical protein
547	 54.96	0	618100..618663	+	187	74311161	ybeM	SSON_0579	-	putative amidase
548	 50.49	0	618792..618995	+	67	74311162	tatE	SSON_0580	-	twin arginine translocase protein E
549	 53.90	0	619070..620416	-	448	74311163	-	SSON_0581	-	IS4 orf
550	 53.31	0	620533..621498	-	321	74311164	lipA	SSON_0582	-	lipoyl synthase
551	 47.44	-1	621707..622507	-	266	74311165	ybeF	SSON_0583	-	putative DNA-binding transcriptional regulator
552	 47.66	0	622920..623561	-	213	161986567	lipB	SSON_0584	-	lipoyltransferase
553	 45.83	-1	623662..623925	-	87	74311167	ybeD	SSON_0585	-	hypothetical protein
554	 49.42	0	624035..625246	-	403