IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
530	 51.73	0	602410..602871	+	153	74311144	-	SSON_0561	-	hypothetical protein
531	 54.74	0	602560..602970	-	136	74311145	rnk	SSON_0562	-	nucleoside diphosphate kinase regulator
532	 51.18	0	603200..604006	-	268	74311146	rna	SSON_0563	-	ribonuclease I
533	 50.48	0	604120..605583	-	487	74311147	ybdS	SSON_0564	-	hypothetical protein
534	 54.61	0	605634..606512	-	292	74311148	citG	SSON_0565	-	triphosphoribosyl-dephospho-CoA synthase
535	 58.70	+1	606487..607038	-	183	74311149	citX	SSON_0566	-	2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo-citrate lyase
536	 56.10	+1	607042..608574	-	510	74311150	citF	SSON_0567	-	citrate lyase alpha chain
537	 57.58	+1	608585..609508	-	307	74311151	citE	SSON_0568	-	citrate lyase beta chain; acyl lyase subunit
538	 55.89	+1	609490..609786	-	98	74311152	citD	SSON_0569	-	citrate lyase subunit gamma
539	 54.56	0	610717..611220	-	167	74311153	-	SSON_0570	-	IS1 ORF
540	 50.03	0	612015..613673	+	552	74311154	citA	SSON_0572	-	putative sensor-type protein
541	 50.37	0	613642..614322	+	226	74311155	citB	SSON_0573	-	two-component response regulator DpiA
542	 51.12	0	614363..615706	-	447	74311156	dcuC	SSON_0574	-	C4-dicarboxylate transporter DcuC
543	 54.37	0	615974..616477	+	167	74311157	-	SSON_0575	-	IS1 ORF
544	 48.86	0	616479..616961	+	160	74311158	crcA	SSON_0576	-	palmitoyl transferase for Lipid A
545	 43.81	-1	617136..617345	+	69