IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
523	 46.83	-1	594277..594906	-	209	74311137	ybdM	SSON_0553	-	hypothetical protein
524	 54.17	0	596395..596898	+	167	74311138	-	SSON_0555	-	IS1 ORF
525	 47.30	-1	596892..597650	-	252	74311139	dsbG	SSON_0556	-	disulfide isomerase/thiol-disulfide oxidase
526	 49.82	0	598022..598585	+	187	74311140	ahpC	SSON_0557	-	alkyl hydroperoxide reductase subunit C
527	 52.63	0	598726..600321	+	531	74311141	ahpF	SSON_0558	-	alkyl hydroperoxide reductase, F52a subunit
528	 49.65	0	600442..600870	-	142	74311142	ybdQ	SSON_0559	-	hypothetical protein
529	 50.44	0	601091..602329	+	412	74311143	ybdR	SSON_0560	-	putative oxidoreductase
530	 51.73	0	602410..602871	+	153	74311144	-	SSON_0561	-	hypothetical protein
531	 54.74	0	602560..602970	-	136	74311145	rnk	SSON_0562	-	nucleoside diphosphate kinase regulator
532	 51.18	0	603200..604006	-	268	74311146	rna	SSON_0563	-	ribonuclease I
533	 50.48	0	604120..605583	-	487	74311147	ybdS	SSON_0564	-	hypothetical protein
534	 54.61	0	605634..606512	-	292	74311148	citG	SSON_0565	-	triphosphoribosyl-dephospho-CoA synthase
535	 58.70	+1	606487..607038	-	183	74311149	citX	SSON_0566	-	2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo-citrate lyase
536	 56.10	+1	607042..608574	-	510	74311150	citF	SSON_0567	-	citrate lyase alpha chain
537	 57.58	+1	608585..609508	-	307	74311151	citE	SSON_0568	-	citrate lyase beta chain; acyl lyase subunit
538	 55.89	+1	609490..609786	-	98