IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
520	 52.02	0	591712..591909	+	65	74311134	ybdD	SSON_0550	-	hypothetical protein
521	 54.73	0	591919..593007	-	362	74311135	ybdH	SSON_0551	-	hypothetical protein
522	 53.66	0	593116..594276	+	386	74311136	ybdL	SSON_0552	-	putative aminotransferase
523	 46.83	-1	594277..594906	-	209	74311137	ybdM	SSON_0553	-	hypothetical protein
524	 54.17	0	596395..596898	+	167	74311138	-	SSON_0555	-	IS1 ORF
525	 47.30	-1	596892..597650	-	252	74311139	dsbG	SSON_0556	-	disulfide isomerase/thiol-disulfide oxidase
526	 49.82	0	598022..598585	+	187	74311140	ahpC	SSON_0557	-	alkyl hydroperoxide reductase subunit C
527	 52.63	0	598726..600321	+	531	74311141	ahpF	SSON_0558	-	alkyl hydroperoxide reductase, F52a subunit
528	 49.65	0	600442..600870	-	142	74311142	ybdQ	SSON_0559	-	hypothetical protein
529	 50.44	0	601091..602329	+	412	74311143	ybdR	SSON_0560	-	putative oxidoreductase
530	 51.73	0	602410..602871	+	153	74311144	-	SSON_0561	-	hypothetical protein
531	 54.74	0	602560..602970	-	136	74311145	rnk	SSON_0562	-	nucleoside diphosphate kinase regulator
532	 51.18	0	603200..604006	-	268	74311146	rna	SSON_0563	-	ribonuclease I
533	 50.48	0	604120..605583	-	487	74311147	ybdS	SSON_0564	-	hypothetical protein
534	 54.61	0	605634..606512	-	292	74311148	citG	SSON_0565	-	triphosphoribosyl-dephospho-CoA synthase
535	 58.70	+1	606487..607038	-	183