IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
516	 55.71	0	587225..588082	+	285	74311130	entB	SSON_0546	-	2,3-dihydro-2,3-dihydroxybenzoate synthetase
517	 57.56	+1	588082..588828	+	248	74311131	entA	SSON_0547	-	2,3-dihydroxybenzoate-2,3-dehydrogenase
518	 57.49	+1	588831..589244	+	137	74311132	ybdB	SSON_0548	-	hypothetical protein
519	 57.17	+1	589425..591530	+	701	74311133	cstA	SSON_0549	-	carbon starvation protein
520	 52.02	0	591712..591909	+	65	74311134	ybdD	SSON_0550	-	hypothetical protein
521	 54.73	0	591919..593007	-	362	74311135	ybdH	SSON_0551	-	hypothetical protein
522	 53.66	0	593116..594276	+	386	74311136	ybdL	SSON_0552	-	putative aminotransferase
523	 46.83	-1	594277..594906	-	209	74311137	ybdM	SSON_0553	-	hypothetical protein
524	 54.17	0	596395..596898	+	167	74311138	-	SSON_0555	-	IS1 ORF
525	 47.30	-1	596892..597650	-	252	74311139	dsbG	SSON_0556	-	disulfide isomerase/thiol-disulfide oxidase
526	 49.82	0	598022..598585	+	187	74311140	ahpC	SSON_0557	-	alkyl hydroperoxide reductase subunit C
527	 52.63	0	598726..600321	+	531	74311141	ahpF	SSON_0558	-	alkyl hydroperoxide reductase, F52a subunit
528	 49.65	0	600442..600870	-	142	74311142	ybdQ	SSON_0559	-	hypothetical protein
529	 50.44	0	601091..602329	+	412	74311143	ybdR	SSON_0560	-	putative oxidoreductase
530	 51.73	0	602410..602871	+	153	74311144	-	SSON_0561	-	hypothetical protein
531	 54.74	0	602560..602970	-	136