version 1.0
Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 510 58.61 +1 579641..580633 - 330 74311124 fepG SSON_0540 - iron-enterobactin transporter permease 511 60.70 +2 580630..581634 - 334 74311125 fepD SSON_0541 - iron-enterobactin transporter membrane protein 512 57.79 +1 581745..582995 + 416 74311126 ybdA SSON_0542 - enterobactin exporter EntS 513 55.28 0 583076..584041 - 321 74311127 fepB SSON_0543 - iron-enterobactin transporter periplasmic binding protein 514 56.29 +1 584416..585591 + 391 74311128 entC SSON_0544 - isochorismate hydroxymutase 2 515 56.05 +1 585601..587211 + 536 74311129 entE SSON_0545 - enterobactin synthase subunit E 516 55.71 0 587225..588082 + 285 74311130 entB SSON_0546 - 2,3-dihydro-2,3-dihydroxybenzoate synthetase 517 57.56 +1 588082..588828 + 248 74311131 entA SSON_0547 - 2,3-dihydroxybenzoate-2,3-dehydrogenase 518 57.49 +1 588831..589244 + 137 74311132 ybdB SSON_0548 - hypothetical protein 519 57.17 +1 589425..591530 + 701 74311133 cstA SSON_0549 - carbon starvation protein 520 52.02 0 591712..591909 + 65 74311134 ybdD SSON_0550 - hypothetical protein 521 54.73 0 591919..593007 - 362 74311135 ybdH SSON_0551 - hypothetical protein 522 53.66 0 593116..594276 + 386 74311136 ybdL SSON_0552 - putative aminotransferase 523 46.83 -1 594277..594906 - 209 74311137 ybdM SSON_0553 - hypothetical protein 524 54.17 0 596395..596898 + 167 74311138 - SSON_0555 - IS1 ORF 525 47.30 -1 596892..597650 - 252 74311139 dsbG SSON_0556 - disulfide isomerase/thiol-disulfide oxidase 526 49.82 0 598022..598585 + 187 74311140 ahpC SSON_0557 - alkyl hydroperoxide reductase subunit C 527 52.63 0 598726..600321 + 531 74311141 ahpF SSON_0558 - alkyl hydroperoxide reductase, F52a subunit 528 49.65 0 600442..600870 - 142 74311142 ybdQ SSON_0559 - hypothetical protein 529 50.44 0 601091..602329 + 412 74311143 ybdR SSON_0560 - putative oxidoreductase 530 51.73 0 602410..602871 + 153 74311144 - SSON_0561 - hypothetical protein 531 54.74 0 602560..602970 - 136 74311145 rnk SSON_0562 - nucleoside diphosphate kinase regulator 532 51.18 0 603200..604006 - 268 74311146 rna SSON_0563 - ribonuclease I 533 50.48 0 604120..605583 - 487 74311147 ybdS SSON_0564 - hypothetical protein 534 54.61 0 605634..606512 - 292 74311148 citG SSON_0565 - triphosphoribosyl-dephospho-CoA synthase 535 58.70 +1 606487..607038 - 183 74311149 citX SSON_0566 - 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo-citrate lyase 536 56.10 +1 607042..608574 - 510 74311150 citF SSON_0567 - citrate lyase alpha chain 537 57.58 +1 608585..609508 - 307 74311151 citE SSON_0568 - citrate lyase beta chain; acyl lyase subunit 538 55.89 +1 609490..609786 - 98 74311152 citD SSON_0569 - citrate lyase subunit gamma 539 54.56 0 610717..611220 - 167 74311153 - SSON_0570 - IS1 ORF 540 50.03 0 612015..613673 + 552 74311154 citA SSON_0572 - putative sensor-type protein 541 50.37 0 613642..614322 + 226 74311155 citB SSON_0573 - two-component response regulator DpiA 542 51.12 0 614363..615706 - 447 74311156 dcuC SSON_0574 - C4-dicarboxylate transporter DcuC 543 54.37 0 615974..616477 + 167 74311157 - SSON_0575 - IS1 ORF 544 48.86 0 616479..616961 + 160 74311158 crcA SSON_0576 - palmitoyl transferase for Lipid A 545 43.81 -1 617136..617345 + 69 74311159 cspE SSON_0577 - cold shock protein CspE 546 49.74 0 617399..617782 - 127 74311160 crcB SSON_0578 - hypothetical protein 547 54.96 0 618100..618663 + 187 74311161 ybeM SSON_0579 - putative amidase 548 50.49 0 618792..618995 + 67 74311162 tatE SSON_0580 - twin arginine translocase protein E 549 53.90 0 619070..620416 - 448 74311163 - SSON_0581 - IS4 orf 550 53.31 0 620533..621498 - 321 74311164 lipA SSON_0582 - lipoyl synthase 551 47.44 -1 621707..622507 - 266 74311165 ybeF SSON_0583 - putative DNA-binding transcriptional regulator 552 47.66 0 622920..623561 - 213 161986567 lipB SSON_0584 - lipoyltransferase 553 45.83 -1 623662..623925 - 87 74311167 ybeD SSON_0585 - hypothetical protein 554 49.42 0 624035..625246 - 403 74311168 dacA SSON_0586 - D-alanyl-D-alanine carboxypeptidase fraction A 555 57.67 +1 625385..626473 - 362 74311169 rlpA SSON_0587 - rare lipoprotein A 556 51.93 0 626484..627596 - 370 74311170 mrdB SSON_0588 - cell wall shape-determining protein 557 52.73 0 627599..629500 - 633 74311171 mrdA SSON_0589 - penicillin-binding protein 2 558 58.55 +1 629531..629998 - 155 74311172 ybeA SSON_0590 - SPOUT methyltransferase superfamily protein 559 51.90 0 630002..630211 - 69 74311173 ybeB SSON_0591 - hypothetical protein 560 50.67 0 630666..631190 - 174 74311174 phpB SSON_0592 - PhpB 561 50.16 0 631214..631855 - 213 74311175 nadD SSON_0593 - nicotinic acid mononucleotide adenylyltransferase 562 51.94 0 631857..632888 - 343 74311176 holA SSON_0594 - DNA polymerase III subunit delta 563 52.23 0 632888..633469 - 193 74311177 rlpB SSON_0595 - LPS-assembly lipoprotein RplB 564 53.27 0 633484..636066 - 860 74311178 leuS SSON_0596 - leucyl-tRNA synthetase 565 52.17 0 636301..636783 + 160 74311179 ybeL SSON_0597 - hypothetical protein 566 46.85 -1 636853..637836 - 327 74311180 ybeQ SSON_0598 - hypothetical protein 567 45.62 -1 637994..638701 + 235 74311181 ybeR SSON_0599 - hypothetical protein 568 48.53 0 638698..640125 + 475 74311182 ybeS SSON_0600 - putative enzyme of polynucleotide modification 569 42.52 -2 640135..640689 - 184 74311183 ybeT SSON_0601 - hypothetical protein 570 47.74 0 640791..641498 + 235 74311184 ybeU SSON_0602 - putative tRNA ligase 571 47.73 0 641495..642946 + 483 74311185 ybeV SSON_0603 - hypothetical protein 572 49.91 0 643006..644676 - 556 74311186 ybeW SSON_0604 - putative dnaK protein 573 51.07 0 644768..645703 - 311 74311187 rihA SSON_0605 - ribonucleoside hydrolase 1 574 51.93 0 645821..646546 - 241 74311188 gltL SSON_0606 - ATP-binding protein of glutamate/aspartate transport system 575 49.93 0 646546..647220 - 224 74311189 gltK SSON_0607 - glutamate/aspartate transport system permease 576 52.23 0 647220..647960 - 246 74311190 gltJ SSON_0608 - glutamate/aspartate transport system permease 577 49.06 0 648130..649038 - 302 74311191 ybeJ SSON_0609 - glutamate and aspartate transporter subunit 578 50.05 0 649493..651370 + 625 74311192 - SSON_0610 - hypothetical protein 579 55.49 0 651448..652986 - 512 74311193 lnt SSON_0611 - apolipoprotein N-acyltransferase 580 51.76 0 653011..653889 - 292 74311194 ybeX SSON_0612 - putative transport protein 581 51.28 0 653979..654446 - 155 74311195 ybeY SSON_0613 - putative metalloprotease 582 54.54 0 654443..655522 - 359 74311196 ybeZ SSON_0614 - putative ATP-binding protein in pho regulon 583 54.04 0 655636..657060 - 474 74311197 yleA SSON_0615 - hypothetical protein 584 56.46 +1 657206..658381 + 391 74311198 ubiF SSON_0616 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 585 52.25 0 659617..661281 - 554 74311201 asnB SSON_0627 - asparagine synthetase B 586 54.56 0 661750..662253 + 167 74311202 - SSON_0628 - IS1 ORF 587 53.52 0 662455..663207 - 250 74311203 nagD SSON_0629 - UMP phosphatase 588 53.07 0 663255..664475 - 406 74311204 nagC SSON_0630 - transcriptional repressor of nag (N-acetylglucosamine) operon 589 52.22 0 664484..665632 - 382 74311205 nagA SSON_0631 - N-acetylglucosamine-6-phosphate deacetylase 590 48.31 0 665692..666492 - 266 74311206 nagB SSON_0632 - glucosamine-6-phosphate deaminase 591 54.44 0 666825..668771 + 648 74311207 nagE SSON_0633 - N-acetyl glucosamine specific PTS system components IIABC 592 53.09 0 669030..670694 + 554 74311208 glnS SSON_0634 - glutaminyl-tRNA synthetase 593 51.28 0 671272..672441 + 389 74311209 ybfM SSON_0635 - hypothetical protein 594 47.40 -1 672728..673054 + 108 74311210 ybfN SSON_0636 - hypothetical protein 595 47.43 -1 673139..673585 - 148 74311211 fur SSON_0637 - ferric uptake regulator 596 48.78 0 673874..674404 - 176 74311212 fldA SSON_0638 - flavodoxin FldA 597 53.99 0 674544..674906 - 120 74311213 ybfE SSON_0639 - LexA regulated protein 598 50.85 0 674977..675741 - 254 74311214 ybfF SSON_0640 - hypothetical protein 599 49.63 0 675926..676471 + 181 74311215 seqA SSON_0641 - replication initiation regulator SeqA 600 55.33 0 676497..678137 + 546 74311216 pgm SSON_0642 - phosphoglucomutase 601 50.61 0 678193..679512 - 439 74311217 potE SSON_0643 - putrescine transporter 602 49.20 0 679509..681707 - 732 74311218 speF SSON_0644 - ornithine decarboxylase 603 57.08 +1 682397..683074 - 225 74311219 kdpE SSON_0645 - DNA-binding transcriptional activator KdpE 604 57.91 +1 683071..685755 - 894 74311220 kdpD SSON_0646 - sensor protein KdpD 605 54.80 0 685748..686320 - 190 74311221 kdpC SSON_0647 - potassium-transporting ATPase subunit C 606 56.17 +1 686329..688377 - 682 74311222 kdpB SSON_0648 - potassium-transporting ATPase subunit B 607 54.72 0 688400..690073 - 557 74311223 kdpA SSON_0649 - potassium-transporting ATPase subunit A 608 50.00 0 690073..690162 - 29 74311224 kdpF SSON_0650 - KdpF protein 609 51.69 0 690475..690681 + 68 74311225 ybfA SSON_0651 - hypothetical protein 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0