IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
509	 53.68	0	578829..579644	-	271	74311123	fepC	SSON_0539	-	iron-enterobactin transporter ATP-binding protein
510	 58.61	+1	579641..580633	-	330	74311124	fepG	SSON_0540	-	iron-enterobactin transporter permease
511	 60.70	+2	580630..581634	-	334	74311125	fepD	SSON_0541	-	iron-enterobactin transporter membrane protein
512	 57.79	+1	581745..582995	+	416	74311126	ybdA	SSON_0542	-	enterobactin exporter EntS
513	 55.28	0	583076..584041	-	321	74311127	fepB	SSON_0543	-	iron-enterobactin transporter periplasmic binding protein
514	 56.29	+1	584416..585591	+	391	74311128	entC	SSON_0544	-	isochorismate hydroxymutase 2
515	 56.05	+1	585601..587211	+	536	74311129	entE	SSON_0545	-	enterobactin synthase subunit E
516	 55.71	0	587225..588082	+	285	74311130	entB	SSON_0546	-	2,3-dihydro-2,3-dihydroxybenzoate synthetase
517	 57.56	+1	588082..588828	+	248	74311131	entA	SSON_0547	-	2,3-dihydroxybenzoate-2,3-dehydrogenase
518	 57.49	+1	588831..589244	+	137	74311132	ybdB	SSON_0548	-	hypothetical protein
519	 57.17	+1	589425..591530	+	701	74311133	cstA	SSON_0549	-	carbon starvation protein
520	 52.02	0	591712..591909	+	65	74311134	ybdD	SSON_0550	-	hypothetical protein
521	 54.73	0	591919..593007	-	362	74311135	ybdH	SSON_0551	-	hypothetical protein
522	 53.66	0	593116..594276	+	386	74311136	ybdL	SSON_0552	-	putative aminotransferase
523	 46.83	-1	594277..594906	-	209	74311137	ybdM	SSON_0553	-	hypothetical protein
524	 54.17	0	596395..596898	+	167