IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
499	 47.76	0	563720..564967	-	415	74311113	ybdG	SSON_0528	-	putative transport
500	 50.92	0	565075..565728	-	217	74311114	nfnB	SSON_0529	-	dihydropteridine reductase
501	 48.24	0	565822..566190	-	122	74311115	ybdF	SSON_0530	-	hypothetical protein
502	 52.28	0	566569..567687	-	372	74311116	ybdK	SSON_0532	-	carboxylate-amine ligase
503	 46.67	-1	568904..569533	-	209	74311117	entD	SSON_0533	-	phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex
504	 54.40	0	569699..571939	-	746	74311118	fepA	SSON_0534	-	outer membrane receptor FepA
505	 54.22	0	572260..573384	+	374	74311119	fes	SSON_0535	-	enterobactin/ferric enterobactin esterase
506	 55.71	0	573387..573605	+	72	74311120	ybdZ	SSON_0536	-	putative cytoplasmic protein
507	 56.36	+1	573602..577483	+	1293	74311121	entF	SSON_0537	-	enterobactin synthase subunit F
508	 44.36	-1	577699..578832	+	377	74311122	fepE	SSON_0538	-	ferric enterobactin transport protein FepE
509	 53.68	0	578829..579644	-	271	74311123	fepC	SSON_0539	-	iron-enterobactin transporter ATP-binding protein
510	 58.61	+1	579641..580633	-	330	74311124	fepG	SSON_0540	-	iron-enterobactin transporter permease
511	 60.70	+2	580630..581634	-	334	74311125	fepD	SSON_0541	-	iron-enterobactin transporter membrane protein
512	 57.79	+1	581745..582995	+	416	74311126	ybdA	SSON_0542	-	enterobactin exporter EntS
513	 55.28	0	583076..584041	-	321	74311127	fepB	SSON_0543	-	iron-enterobactin transporter periplasmic