IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
494	 51.34	0	556042..557424	+	460	74311108	ylcB	SSON_0523	-	copper/silver efflux system outer membrane protein CusC
495	 44.74	-1	557448..557780	+	110	74311109	ylcC	SSON_0524	-	periplasmic copper-binding protein
496	 55.56	0	557796..559019	+	407	74311110	ylcD	SSON_0525	-	copper/silver efflux system membrane fusion protein CusB
497	 55.28	0	559031..562174	+	1047	74311111	ybdE	SSON_0526	-	putative inner membrane component for iron transport
498	 52.51	0	562276..563652	+	458	74311112	pheP	SSON_0527	-	phenylalanine transporter
499	 47.76	0	563720..564967	-	415	74311113	ybdG	SSON_0528	-	putative transport
500	 50.92	0	565075..565728	-	217	74311114	nfnB	SSON_0529	-	dihydropteridine reductase
501	 48.24	0	565822..566190	-	122	74311115	ybdF	SSON_0530	-	hypothetical protein
502	 52.28	0	566569..567687	-	372	74311116	ybdK	SSON_0532	-	carboxylate-amine ligase
503	 46.67	-1	568904..569533	-	209	74311117	entD	SSON_0533	-	phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex
504	 54.40	0	569699..571939	-	746	74311118	fepA	SSON_0534	-	outer membrane receptor FepA
505	 54.22	0	572260..573384	+	374	74311119	fes	SSON_0535	-	enterobactin/ferric enterobactin esterase
506	 55.71	0	573387..573605	+	72	74311120	ybdZ	SSON_0536	-	putative cytoplasmic protein
507	 56.36	+1	573602..577483	+	1293	74311121	entF	SSON_0537	-	enterobactin synthase subunit F
508	 44.36	-1	577699..578832	+	377	74311122	fepE	SSON_0538	-	ferric enterobactin t