IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
481	 49.81	0	536175..536690	+	171	74311095	sfmF	SSON_0507	-	putative fimbrial protein
482	 55.19	0	537623..538528	+	301	161986568	-	SSON_0508	-	insertion element IS2 transposase InsD
483	 54.37	0	538633..539136	-	167	74311097	-	SSON_0509	-	IS1 ORF
484	 46.06	-1	539802..540563	-	253	74311098	envY	SSON_0512	-	envelope protein
485	 51.96	0	540746..541636	-	296	74311099	ybcH	SSON_0513	-	hypothetical protein
486	 54.93	0	541637..544609	-	990	74311100	nfrA	SSON_0514	-	bacteriophage N4 receptor, outer membrane subunit
487	 54.56	0	545343..545846	-	167	74311101	-	SSON_0516	-	IS1 ORF
488	 60.20	+2	546074..549505	-	1143	74311102	-	SSON_0517	-	rhs core protein with extension
489	 57.27	+1	549478..550563	-	361	74311103	-	SSON_0518	-	hypothetical protein
490	 54.98	0	550637..551098	-	153	74311104	-	SSON_0519	-	hypothetical protein
491	 56.83	+1	551126..553027	-	633	74311105	-	SSON_0520	-	putative Vgr protein
492	 52.04	0	553764..555212	-	482	74311106	ybcZ	SSON_0521	-	sensor kinase CusS
493	 55.26	0	555202..555885	-	227	74311107	ylcA	SSON_0522	-	DNA-binding transcriptional activator CusR
494	 51.34	0	556042..557424	+	460	74311108	ylcB	SSON_0523	-	copper/silver efflux system outer membrane protein CusC
495	 44.74	-1	557448..557780	+	110	74311109	ylcC	SSON_0524	-	periplasmic copper-binding protein
496	 55.56	0	557796..559019	+	407