IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
465	 54.37	0	518583..519086	-	167	74311079	-	SSON_0488	-	IS1 ORF
466	 54.67	0	519544..520410	+	288	74311080	folD	SSON_0489	-	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase
467	 55.87	+1	520412..520624	+	70	161986569	ybcJ	SSON_0490	-	hypothetical protein
468	 53.00	0	520837..521253	+	138	74311082	ybcI	SSON_0491	-	hypothetical protein
469	 54.11	0	521289..522674	-	461	74311083	cysS	SSON_0492	-	cysteinyl-tRNA synthetase
470	 47.68	0	522848..523342	+	164	74311084	ppiB	SSON_0493	-	peptidyl-prolyl cis-trans isomerase B (rotamase B)
471	 53.67	0	523345..524067	+	240	74311085	ybbF	SSON_0494	-	UDP-2,3-diacylglucosamine hydrolase
472	 58.04	+1	524185..524694	+	169	74311086	purE	SSON_0495	-	phosphoribosylaminoimidazole carboxylase
473	 56.46	+1	524691..525758	+	355	74311087	purK	SSON_0496	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
474	 57.16	+1	525895..526788	-	297	74311088	arcC	SSON_0497	-	carbamate kinase
475	 56.57	+1	526785..527438	-	217	74311089	ylbF	SSON_0498	-	putative carboxylase
476	 57.19	+1	527449..528450	-	333	74311090	ylbE	SSON_0499	-	hypothetical protein
477	 54.37	0	528762..529265	-	167	74311091	-	SSON_0500	-	IS1 ORF
478	 46.24	-1	531529..532380	-	283	74311092	gip	SSON_0503	-	hydroxypyruvate isomerase
479	 54.17	0	532819..533322	+	167	74311093	-	SSON_0504	-	IS1 ORF
480	 45.71	-1	535187..536164	+	325