version 1.0
Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 464 55.16 0 516314..517408 - 364 74311078 ybbB SSON_0486 - tRNA 2-selenouridine synthase 465 54.37 0 518583..519086 - 167 74311079 - SSON_0488 - IS1 ORF 466 54.67 0 519544..520410 + 288 74311080 folD SSON_0489 - bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 467 55.87 +1 520412..520624 + 70 161986569 ybcJ SSON_0490 - hypothetical protein 468 53.00 0 520837..521253 + 138 74311082 ybcI SSON_0491 - hypothetical protein 469 54.11 0 521289..522674 - 461 74311083 cysS SSON_0492 - cysteinyl-tRNA synthetase 470 47.68 0 522848..523342 + 164 74311084 ppiB SSON_0493 - peptidyl-prolyl cis-trans isomerase B (rotamase B) 471 53.67 0 523345..524067 + 240 74311085 ybbF SSON_0494 - UDP-2,3-diacylglucosamine hydrolase 472 58.04 +1 524185..524694 + 169 74311086 purE SSON_0495 - phosphoribosylaminoimidazole carboxylase 473 56.46 +1 524691..525758 + 355 74311087 purK SSON_0496 - phosphoribosylaminoimidazole carboxylase ATPase subunit 474 57.16 +1 525895..526788 - 297 74311088 arcC SSON_0497 - carbamate kinase 475 56.57 +1 526785..527438 - 217 74311089 ylbF SSON_0498 - putative carboxylase 476 57.19 +1 527449..528450 - 333 74311090 ylbE SSON_0499 - hypothetical protein 477 54.37 0 528762..529265 - 167 74311091 - SSON_0500 - IS1 ORF 478 46.24 -1 531529..532380 - 283 74311092 gip SSON_0503 - hydroxypyruvate isomerase 479 54.17 0 532819..533322 + 167 74311093 - SSON_0504 - IS1 ORF 480 45.71 -1 535187..536164 + 325 74311094 sfmH SSON_0506 - involved in fimbrial asembly 481 49.81 0 536175..536690 + 171 74311095 sfmF SSON_0507 - putative fimbrial protein 482 55.19 0 537623..538528 + 301 161986568 - SSON_0508 - insertion element IS2 transposase InsD 483 54.37 0 538633..539136 - 167 74311097 - SSON_0509 - IS1 ORF 484 46.06 -1 539802..540563 - 253 74311098 envY SSON_0512 - envelope protein 485 51.96 0 540746..541636 - 296 74311099 ybcH SSON_0513 - hypothetical protein 486 54.93 0 541637..544609 - 990 74311100 nfrA SSON_0514 - bacteriophage N4 receptor, outer membrane subunit 487 54.56 0 545343..545846 - 167 74311101 - SSON_0516 - IS1 ORF 488 60.20 +2 546074..549505 - 1143 74311102 - SSON_0517 - rhs core protein with extension 489 57.27 +1 549478..550563 - 361 74311103 - SSON_0518 - hypothetical protein 490 54.98 0 550637..551098 - 153 74311104 - SSON_0519 - hypothetical protein 491 56.83 +1 551126..553027 - 633 74311105 - SSON_0520 - putative Vgr protein 492 52.04 0 553764..555212 - 482 74311106 ybcZ SSON_0521 - sensor kinase CusS 493 55.26 0 555202..555885 - 227 74311107 ylcA SSON_0522 - DNA-binding transcriptional activator CusR 494 51.34 0 556042..557424 + 460 74311108 ylcB SSON_0523 - copper/silver efflux system outer membrane protein CusC 495 44.74 -1 557448..557780 + 110 74311109 ylcC SSON_0524 - periplasmic copper-binding protein 496 55.56 0 557796..559019 + 407 74311110 ylcD SSON_0525 - copper/silver efflux system membrane fusion protein CusB 497 55.28 0 559031..562174 + 1047 74311111 ybdE SSON_0526 - putative inner membrane component for iron transport 498 52.51 0 562276..563652 + 458 74311112 pheP SSON_0527 - phenylalanine transporter 499 47.76 0 563720..564967 - 415 74311113 ybdG SSON_0528 - putative transport 500 50.92 0 565075..565728 - 217 74311114 nfnB SSON_0529 - dihydropteridine reductase 501 48.24 0 565822..566190 - 122 74311115 ybdF SSON_0530 - hypothetical protein 502 52.28 0 566569..567687 - 372 74311116 ybdK SSON_0532 - carboxylate-amine ligase 503 46.67 -1 568904..569533 - 209 74311117 entD SSON_0533 - phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex 504 54.40 0 569699..571939 - 746 74311118 fepA SSON_0534 - outer membrane receptor FepA 505 54.22 0 572260..573384 + 374 74311119 fes SSON_0535 - enterobactin/ferric enterobactin esterase 506 55.71 0 573387..573605 + 72 74311120 ybdZ SSON_0536 - putative cytoplasmic protein 507 56.36 +1 573602..577483 + 1293 74311121 entF SSON_0537 - enterobactin synthase subunit F 508 44.36 -1 577699..578832 + 377 74311122 fepE SSON_0538 - ferric enterobactin transport protein FepE 509 53.68 0 578829..579644 - 271 74311123 fepC SSON_0539 - iron-enterobactin transporter ATP-binding protein 510 58.61 +1 579641..580633 - 330 74311124 fepG SSON_0540 - iron-enterobactin transporter permease 511 60.70 +2 580630..581634 - 334 74311125 fepD SSON_0541 - iron-enterobactin transporter membrane protein 512 57.79 +1 581745..582995 + 416 74311126 ybdA SSON_0542 - enterobactin exporter EntS 513 55.28 0 583076..584041 - 321 74311127 fepB SSON_0543 - iron-enterobactin transporter periplasmic binding protein 514 56.29 +1 584416..585591 + 391 74311128 entC SSON_0544 - isochorismate hydroxymutase 2 515 56.05 +1 585601..587211 + 536 74311129 entE SSON_0545 - enterobactin synthase subunit E 516 55.71 0 587225..588082 + 285 74311130 entB SSON_0546 - 2,3-dihydro-2,3-dihydroxybenzoate synthetase 517 57.56 +1 588082..588828 + 248 74311131 entA SSON_0547 - 2,3-dihydroxybenzoate-2,3-dehydrogenase 518 57.49 +1 588831..589244 + 137 74311132 ybdB SSON_0548 - hypothetical protein 519 57.17 +1 589425..591530 + 701 74311133 cstA SSON_0549 - carbon starvation protein 520 52.02 0 591712..591909 + 65 74311134 ybdD SSON_0550 - hypothetical protein 521 54.73 0 591919..593007 - 362 74311135 ybdH SSON_0551 - hypothetical protein 522 53.66 0 593116..594276 + 386 74311136 ybdL SSON_0552 - putative aminotransferase 523 46.83 -1 594277..594906 - 209 74311137 ybdM SSON_0553 - hypothetical protein 524 54.17 0 596395..596898 + 167 74311138 - SSON_0555 - IS1 ORF 525 47.30 -1 596892..597650 - 252 74311139 dsbG SSON_0556 - disulfide isomerase/thiol-disulfide oxidase 526 49.82 0 598022..598585 + 187 74311140 ahpC SSON_0557 - alkyl hydroperoxide reductase subunit C 527 52.63 0 598726..600321 + 531 74311141 ahpF SSON_0558 - alkyl hydroperoxide reductase, F52a subunit 528 49.65 0 600442..600870 - 142 74311142 ybdQ SSON_0559 - hypothetical protein 529 50.44 0 601091..602329 + 412 74311143 ybdR SSON_0560 - putative oxidoreductase 530 51.73 0 602410..602871 + 153 74311144 - SSON_0561 - hypothetical protein 531 54.74 0 602560..602970 - 136 74311145 rnk SSON_0562 - nucleoside diphosphate kinase regulator 532 51.18 0 603200..604006 - 268 74311146 rna SSON_0563 - ribonuclease I 533 50.48 0 604120..605583 - 487 74311147 ybdS SSON_0564 - hypothetical protein 534 54.61 0 605634..606512 - 292 74311148 citG SSON_0565 - triphosphoribosyl-dephospho-CoA synthase 535 58.70 +1 606487..607038 - 183 74311149 citX SSON_0566 - 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo-citrate lyase 536 56.10 +1 607042..608574 - 510 74311150 citF SSON_0567 - citrate lyase alpha chain 537 57.58 +1 608585..609508 - 307 74311151 citE SSON_0568 - citrate lyase beta chain; acyl lyase subunit 538 55.89 +1 609490..609786 - 98 74311152 citD SSON_0569 - citrate lyase subunit gamma 539 54.56 0 610717..611220 - 167 74311153 - SSON_0570 - IS1 ORF 540 50.03 0 612015..613673 + 552 74311154 citA SSON_0572 - putative sensor-type protein 541 50.37 0 613642..614322 + 226 74311155 citB SSON_0573 - two-component response regulator DpiA 542 51.12 0 614363..615706 - 447 74311156 dcuC SSON_0574 - C4-dicarboxylate transporter DcuC 543 54.37 0 615974..616477 + 167 74311157 - SSON_0575 - IS1 ORF 544 48.86 0 616479..616961 + 160 74311158 crcA SSON_0576 - palmitoyl transferase for Lipid A 545 43.81 -1 617136..617345 + 69 74311159 cspE SSON_0577 - cold shock protein CspE 546 49.74 0 617399..617782 - 127 74311160 crcB SSON_0578 - hypothetical protein 547 54.96 0 618100..618663 + 187 74311161 ybeM SSON_0579 - putative amidase 548 50.49 0 618792..618995 + 67 74311162 tatE SSON_0580 - twin arginine translocase protein E 549 53.90 0 619070..620416 - 448 74311163 - SSON_0581 - IS4 orf 550 53.31 0 620533..621498 - 321 74311164 lipA SSON_0582 - lipoyl synthase 551 47.44 -1 621707..622507 - 266 74311165 ybeF SSON_0583 - putative DNA-binding transcriptional regulator 552 47.66 0 622920..623561 - 213 161986567 lipB SSON_0584 - lipoyltransferase 553 45.83 -1 623662..623925 - 87 74311167 ybeD SSON_0585 - hypothetical protein 554 49.42 0 624035..625246 - 403 74311168 dacA SSON_0586 - D-alanyl-D-alanine carboxypeptidase fraction A 555 57.67 +1 625385..626473 - 362 74311169 rlpA SSON_0587 - rare lipoprotein A 556 51.93 0 626484..627596 - 370 74311170 mrdB SSON_0588 - cell wall shape-determining protein 557 52.73 0 627599..629500 - 633 74311171 mrdA SSON_0589 - penicillin-binding protein 2 558 58.55 +1 629531..629998 - 155 74311172 ybeA SSON_0590 - SPOUT methyltransferase superfamily protein 559 51.90 0 630002..630211 - 69 74311173 ybeB SSON_0591 - hypothetical protein 560 50.67 0 630666..631190 - 174 74311174 phpB SSON_0592 - PhpB 561 50.16 0 631214..631855 - 213 74311175 nadD SSON_0593 - nicotinic acid mononucleotide adenylyltransferase 562 51.94 0 631857..632888 - 343 74311176 holA SSON_0594 - DNA polymerase III subunit delta 563 52.23 0 632888..633469 - 193 74311177 rlpB SSON_0595 - LPS-assembly lipoprotein RplB 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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