IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
452	 53.38	0	504891..505823	+	310	74311066	ybaS	SSON_0474	-	glutaminase
453	 53.05	0	505826..507118	+	430	74311067	ybaT	SSON_0475	-	putative amino acid/amine transport protein
454	 58.58	+1	507243..507650	+	135	74311068	ybbI	SSON_0476	-	DNA-binding transcriptional regulator CueR
455	 57.46	+1	507651..508106	-	151	74311069	ybbJ	SSON_0477	-	hypothetical protein
456	 52.61	0	508106..509023	-	305	74311070	ybbK	SSON_0478	-	putative protease
457	 45.43	-1	509169..509846	+	225	74311071	ybbL	SSON_0479	-	putative ABC transporter ATP-binding protein YbbL
458	 46.34	-1	509806..510612	+	268	74311072	ybbM	SSON_0480	-	putative metal resistance protein
459	 54.88	0	510675..511565	-	296	74311073	ybbN	SSON_0481	-	putative thioredoxin-like protein
460	 53.83	0	511590..512399	-	269	74311074	ybbO	SSON_0482	-	short chain dehydrogenase
461	 52.95	0	512389..513015	-	208	74311076	tesA	SSON_0484	-	multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1
462	 56.62	+1	512983..513669	+	228	74311075	ybbA	SSON_0483	-	putative ABC transporter ATP-binding protein YbbA
463	 57.52	+1	513666..516080	+	804	74311077	ybbP	SSON_0485	-	putative oxidoreductase
464	 55.16	0	516314..517408	-	364	74311078	ybbB	SSON_0486	-	tRNA 2-selenouridine synthase
465	 54.37	0	518583..519086	-	167	74311079	-	SSON_0488	-	IS1 ORF
466	 54.67	0	519544..520410	+	288	74311080	folD	SSON_0489	-	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydro