IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4120	 54.05	0	4714389..4714832	-	147	74314738	holC	SSON_4444	-	DNA polymerase III subunit chi
4121	 54.56	0	4714966..4716477	-	503	74314739	pepA	SSON_4445	-	leucyl aminopeptidase
4122	 54.86	0	4716744..4717844	+	366	74314740	yjgP	SSON_4446	-	hypothetical protein
4123	 54.14	0	4717841..4718926	+	361	74314741	yjgQ	SSON_4447	-	hypothetical protein
4124	 53.16	0	4719045..4720547	-	500	74314742	yjgR	SSON_4448	-	hypothetical protein
4125	 47.28	-1	4720625..4721599	-	324	74314743	idnR	SSON_4449	-	L-idonate transcriptional regulator
4126	 50.53	0	4721666..4722985	-	439	74314744	idnT	SSON_4450	-	L-idonate transporter
4127	 49.41	0	4723050..4723814	-	254	74314745	idnO	SSON_4451	-	gluconate 5-dehydrogenase
4128	 47.29	-1	4723838..4724869	-	343	74314746	idnD	SSON_4452	-	L-idonate 5-dehydrogenase
4129	 43.97	-1	4725086..4725649	+	187	74314747	idnK	SSON_4453	-	D-gluconate kinase
4130	 55.08	0	4725653..4726714	-	353	74314748	yjgB	SSON_4454	-	putative oxidoreductase
4131	 51.96	0	4727686..4728399	-	237	74314749	-	SSON_4456	-	IS600 ORF2
4132	 46.53	-1	4728540..4728842	-	100	74314750	-	SSON_4457	-	IS600 ORF1
4133	 54.52	0	4729449..4730288	+	279	74314751	-	SSON_4458	-	IS911 ORF2
4134	 53.78	0	4730804..4731571	-	255	74314752	fecE	SSON_4459	-	iron-dicitrate transporter ATP-binding subunit
4135	 59.77	+1	4731572..4732528	-	318