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Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 4120 54.05 0 4714389..4714832 - 147 74314738 holC SSON_4444 - DNA polymerase III subunit chi 4121 54.56 0 4714966..4716477 - 503 74314739 pepA SSON_4445 - leucyl aminopeptidase 4122 54.86 0 4716744..4717844 + 366 74314740 yjgP SSON_4446 - hypothetical protein 4123 54.14 0 4717841..4718926 + 361 74314741 yjgQ SSON_4447 - hypothetical protein 4124 53.16 0 4719045..4720547 - 500 74314742 yjgR SSON_4448 - hypothetical protein 4125 47.28 -1 4720625..4721599 - 324 74314743 idnR SSON_4449 - L-idonate transcriptional regulator 4126 50.53 0 4721666..4722985 - 439 74314744 idnT SSON_4450 - L-idonate transporter 4127 49.41 0 4723050..4723814 - 254 74314745 idnO SSON_4451 - gluconate 5-dehydrogenase 4128 47.29 -1 4723838..4724869 - 343 74314746 idnD SSON_4452 - L-idonate 5-dehydrogenase 4129 43.97 -1 4725086..4725649 + 187 74314747 idnK SSON_4453 - D-gluconate kinase 4130 55.08 0 4725653..4726714 - 353 74314748 yjgB SSON_4454 - putative oxidoreductase 4131 51.96 0 4727686..4728399 - 237 74314749 - SSON_4456 - IS600 ORF2 4132 46.53 -1 4728540..4728842 - 100 74314750 - SSON_4457 - IS600 ORF1 4133 54.52 0 4729449..4730288 + 279 74314751 - SSON_4458 - IS911 ORF2 4134 53.78 0 4730804..4731571 - 255 74314752 fecE SSON_4459 - iron-dicitrate transporter ATP-binding subunit 4135 59.77 +1 4731572..4732528 - 318 74314753 fecD SSON_4460 - iron-dicitrate transporter subunit FecD 4136 60.86 +2 4732525..4733523 - 332 74314754 fecC SSON_4461 - iron-dicitrate transporter permease subunit 4137 57.54 +1 4733520..4734428 - 302 74314755 fecB SSON_4462 - iron-dicitrate transporter substrate-binding subunit 4138 58.58 +1 4734467..4736791 - 774 74314756 fecA SSON_4463 - outer membrane receptor 4139 59.01 +1 4736878..4737831 - 317 74314757 fecR SSON_4464 - fec operon regulator FecR 4140 54.41 0 4737828..4738349 - 173 74314758 fecI SSON_4465 - RNA polymerase sigma factor FecI 4141 52.54 0 4738641..4738916 + 91 74314759 insA SSON_4466 - IS1 ORF1 4142 56.12 +1 4738835..4739128 + 97 74314760 - SSON_4467 - IS1 ORF 4143 48.57 0 4739129..4739338 + 69 74314761 - SSON_4468 - IS1 ORF 4144 54.37 0 4739626..4740129 + 167 74314762 - SSON_4469 - IS1 ORF 4145 54.37 0 4741449..4741952 + 167 74314763 - SSON_4470 - IS1 ORF 4146 48.42 0 4742199..4743179 - 326 74314764 yjhS SSON_4471 - hypothetical protein 4147 43.54 -1 4743244..4744458 - 404 74314765 yjhT SSON_4472 - hypothetical protein 4148 42.84 -2 4744370..4745095 - 241 74314766 yjhA SSON_4473 - hypothetical protein 4149 52.91 0 4745945..4746976 + 343 74314767 - SSON_4474 - IS630 orf 4150 54.17 0 4747419..4747922 + 167 74314768 - SSON_4475 - IS1 ORF 4151 54.68 0 4749389..4750573 + 394 74314769 uxuA SSON_4477 - mannonate dehydratase 4152 57.22 +1 4750654..4752114 + 486 74314770 uxuB SSON_4478 - D-mannonate oxidoreductase 4153 53.10 0 4752329..4753102 + 257 74314771 uxuR SSON_4479 - DNA-binding transcriptional repressor UxuR 4154 40.07 -2 4753243..4754073 - 276 74314772 yjiC SSON_4480 - hypothetical protein 4155 54.17 0 4754214..4754717 - 167 74314773 - SSON_4481 - IS1 ORF 4156 48.19 0 4754982..4755755 + 257 74314774 - SSON_4482 - hypothetical protein 4157 57.73 +1 4755734..4756930 - 398 74314775 - SSON_4483 - ISSfl2 ORF 4158 49.37 0 4757338..4758054 + 238 74314776 - SSON_4484 - hypothetical protein 4159 55.44 0 4758132..4758986 - 284 74314777 yjiA SSON_4485 - putative GTP-binding protein YjiA 4160 50.49 0 4759099..4759302 - 67 74314778 yjiX SSON_4486 - hypothetical protein 4161 55.77 0 4759352..4761517 - 721 74314779 yjiY SSON_4487 - putative carbon starvation protein 4162 54.39 0 4761895..4762407 - 170 74314780 hpaC SSON_4488 - 4-hydroxyphenylacetate 3-monooxygenase coupling protein 4163 54.38 0 4762425..4763987 - 520 74314781 hpaB SSON_4489 - 4-hydroxyphenylacetate 3-monooxygenase 4164 52.10 0 4764928..4765641 - 237 74314782 - SSON_4490 - IS600 ORF2 4165 46.53 -1 4765782..4766084 - 100 74314783 - SSON_4491 - IS600 ORF1 4166 54.10 0 4766405..4767781 - 458 74314784 hpaX SSON_4493 - putative 4-hydroxyphenylacetate permease 4167 60.58 +2 4767956..4768744 - 262 74314785 hpaI SSON_4494 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (HHED aldolase) 4168 58.58 +1 4768755..4769558 - 267 74314786 hpaH SSON_4495 - 2-oxo-hept-3-ene-1,7-dioate hydratase 4169 54.59 0 4769669..4770049 - 126 74314787 hpaF SSON_4496 - 5-carboxymethyl-2-hydroxymuconate delta-isomerase 4170 55.16 0 4770059..4770910 - 283 74314788 hpaD SSON_4497 - homoprotocatechuate dyoxygenase 4171 58.28 +1 4770912..4772378 - 488 74314789 hpaE SSON_4498 - 5-carboxy-2-hydroxymuconate semialdehyde dehydrogenase 4172 55.66 0 4772375..4773664 - 429 74314790 hpaG SSON_4499 - 5-oxo-1,2,5-tricarboxilic-3-penten acid decarboxilase/isomerase 4173 50.56 0 4773936..4774382 + 148 74314791 hpcR SSON_4500 - homoprotocatechuate degradative operon repressor 4174 47.21 -1 4777771..4778577 - 268 74314792 yjjM SSON_4503 - hypothetical protein 4175 50.87 0 4778809..4779846 + 345 74314793 yjjN SSON_4504 - putative oxidoreductase 4176 52.09 0 4779985..4782276 - 763 161986380 mdoB SSON_4505 - phosphoglycerol transferase I 4177 51.00 0 4782530..4783027 - 165 74314795 yjjA SSON_4506 - hypothetical protein 4178 50.81 0 4783073..4783810 - 245 74314796 dnaC SSON_4507 - DNA replication protein DnaC 4179 56.48 +1 4783813..4784352 - 179 74314797 dnaT SSON_4508 - primosomal protein I 4180 48.93 0 4784460..4784786 - 108 74314798 yjjB SSON_4509 - hypothetical protein 4181 51.44 0 4784924..4785757 - 277 74314799 yjjP SSON_4510 - putative structural protein 4182 54.37 0 4786637..4787140 + 167 74314800 - SSON_4511 - IS1 ORF 4183 53.33 0 4787533..4788162 - 209 74314801 - SSON_4512 - IS1 ORF 4184 45.83 -1 4788566..4789189 + 207 161986379 bglJ SSON_4513 - DNA-binding transcriptional activator BglJ 4185 53.23 0 4789227..4790015 - 262 74314803 fhuF SSON_4514 - ferric iron reductase involved in ferric hydroximate transport 4186 44.83 -1 4790045..4790392 + 115 74314804 - SSON_4515 - putative inner membrane protein 4187 55.33 0 4791257..4792288 - 343 74314805 rsmC SSON_4521 - 16S ribosomal RNA m2G1207 methyltransferase 4188 58.21 +1 4792391..4792804 + 137 74314806 holD SSON_4522 - DNA polymerase III subunit psi 4189 51.90 0 4792773..4793219 + 148 74314807 rimI SSON_4523 - ribosomal-protein-alanine N-acetyltransferase 4190 53.24 0 4793234..4793911 + 225 74314808 yjjG SSON_4524 - nucleotidase 4191 53.65 0 4794002..4795591 + 529 74314809 prfC SSON_4525 - peptide chain release factor 3 4192 51.82 0 4795984..4796589 + 201 74314810 osmY SSON_4526 - periplasmic protein 4193 51.85 0 4796716..4796877 + 53 74314811 - SSON_4527 - hypothetical protein 4194 53.82 0 4796999..4798072 + 357 74314812 yjjU SSON_4528 - hypothetical protein 4195 55.04 0 4798069..4798851 + 260 74314813 yjjV SSON_4529 - putative deoxyribonuclease YjjV 4196 55.32 0 4799367..4800230 - 287 74314814 yjjW SSON_4530 - putative activating enzyme 4197 53.19 0 4800202..4801752 - 516 74314815 yjjI SSON_4531 - hypothetical protein 4198 54.74 0 4802010..4802789 + 259 74314816 deoC SSON_4532 - deoxyribose-phosphate aldolase 4199 54.80 0 4802916..4804238 + 440 74314817 deoA SSON_4533 - thymidine phosphorylase 4200 54.00 0 4804290..4805513 + 407 74314818 deoB SSON_4534 - phosphopentomutase 4201 52.78 0 4805593..4806312 + 239 74314819 deoD SSON_4535 - purine nucleoside phosphorylase 4202 57.62 +1 4806768..4807784 - 338 74314820 lplA SSON_4536 - lipoate-protein ligase A 4203 55.97 +1 4807812..4808456 - 214 74314821 smp SSON_4537 - hypothetical protein 4204 56.04 +1 4808562..4809530 + 322 74314822 serB SSON_4538 - phosphoserine phosphatase 4205 57.48 +1 4809579..4810961 + 460 74314823 sms SSON_4539 - DNA repair protein RadA 4206 50.53 0 4810982..4812214 + 410 161986378 nadR SSON_4540 - nicotinamide-nucleotide adenylyltransferase 4207 55.28 0 4812521..4814188 - 555 74314825 yjjK SSON_4541 - putative ABC transporter ATP-binding protein 4208 54.39 0 4814399..4816336 + 645 161986377 slt SSON_4542 - lytic murein transglycosylase 4209 53.82 0 4816426..4816752 + 108 74314827 trpR SSON_4543 - Trp operon repressor 4210 55.94 +1 4816837..4817358 - 173 161986376 yjjX SSON_4544 - NTPase 4211 56.17 +1 4817410..4818057 + 215 74314829 gpmB SSON_4545 - phosphoglycerate mutase 4212 53.10 0 4818054..4818923 - 289 74314830 rob SSON_4546 - right origin-binding protein 4213 48.95 0 4819134..4819607 + 157 74314831 creA SSON_4547 - hypothetical protein 4214 55.22 0 4819620..4820309 + 229 74314832 creB SSON_4548 - DNA-binding response regulator CreB 4215 54.11 0 4820309..4821733 + 474 74314833 creC SSON_4549 - sensory histidine kinase CreC 4216 49.52 0 4821791..4823143 + 450 74314834 creD SSON_4550 - hypothetical protein 4217 51.05 0 4823203..4823919 - 238 74314835 arcA SSON_4551 - two-component response regulator 4218 42.55 -2 4824015..4824155 + 46 74314836 yjjY SSON_4552 - hypothetical protein 4219 50.22 0 4824555..4825241 + 228 74314837 lasT SSON_4553 - putative RNA methyltransferase 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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