IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4115	 53.70	0	4707325..4707702	-	125	74314733	-	SSON_4439	-	IS1 ORF
4116	 53.03	0	4707841..4709013	+	390	74314734	-	SSON_4440	-	IS21 ORF1
4117	 52.63	0	4709013..4709810	+	265	74314735	-	SSON_4441	-	IS21 ORF2
4118	 37.18	-2	4710282..4711478	+	398	74314736	yjgN	SSON_4442	-	hypothetical protein
4119	 55.11	0	4711534..4714389	-	951	74314737	valS	SSON_4443	-	valyl-tRNA synthetase
4120	 54.05	0	4714389..4714832	-	147	74314738	holC	SSON_4444	-	DNA polymerase III subunit chi
4121	 54.56	0	4714966..4716477	-	503	74314739	pepA	SSON_4445	-	leucyl aminopeptidase
4122	 54.86	0	4716744..4717844	+	366	74314740	yjgP	SSON_4446	-	hypothetical protein
4123	 54.14	0	4717841..4718926	+	361	74314741	yjgQ	SSON_4447	-	hypothetical protein
4124	 53.16	0	4719045..4720547	-	500	74314742	yjgR	SSON_4448	-	hypothetical protein
4125	 47.28	-1	4720625..4721599	-	324	74314743	idnR	SSON_4449	-	L-idonate transcriptional regulator
4126	 50.53	0	4721666..4722985	-	439	74314744	idnT	SSON_4450	-	L-idonate transporter
4127	 49.41	0	4723050..4723814	-	254	74314745	idnO	SSON_4451	-	gluconate 5-dehydrogenase
4128	 47.29	-1	4723838..4724869	-	343	74314746	idnD	SSON_4452	-	L-idonate 5-dehydrogenase
4129	 43.97	-1	4725086..4725649	+	187	74314747	idnK	SSON_4453	-	D-gluconate kinase
4130	 55.08	0	4725653..4726714	-	353