IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4109	 49.41	0	4700916..4701170	+	84	74314727	yjgJ	SSON_4431	-	hypothetical protein
4110	 54.37	0	4701703..4702206	+	167	74314728	-	SSON_4433	-	IS1 ORF
4111	 54.37	0	4703330..4703833	-	167	74314729	-	SSON_4435	-	IS1 ORF
4112	 51.64	0	4705168..4706172	-	334	74314730	argI	SSON_4436	-	ornithine carbamoyltransferase subunit I
4113	 49.16	0	4706334..4706750	+	138	74314731	yjgD	SSON_4437	-	hypothetical protein
4114	 51.70	0	4706796..4707089	-	97	74314732	-	SSON_4438	-	hypothetical protein
4115	 53.70	0	4707325..4707702	-	125	74314733	-	SSON_4439	-	IS1 ORF
4116	 53.03	0	4707841..4709013	+	390	74314734	-	SSON_4440	-	IS21 ORF1
4117	 52.63	0	4709013..4709810	+	265	74314735	-	SSON_4441	-	IS21 ORF2
4118	 37.18	-2	4710282..4711478	+	398	74314736	yjgN	SSON_4442	-	hypothetical protein
4119	 55.11	0	4711534..4714389	-	951	74314737	valS	SSON_4443	-	valyl-tRNA synthetase
4120	 54.05	0	4714389..4714832	-	147	74314738	holC	SSON_4444	-	DNA polymerase III subunit chi
4121	 54.56	0	4714966..4716477	-	503	74314739	pepA	SSON_4445	-	leucyl aminopeptidase
4122	 54.86	0	4716744..4717844	+	366	74314740	yjgP	SSON_4446	-	hypothetical protein
4123	 54.14	0	4717841..4718926	+	361	74314741	yjgQ	SSON_4447	-	hypothetical protein
4124	 53.16	0	4719045..4720547	-	500	74314742