IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4081	 50.82	0	4666880..4668223	-	447	74314699	ytfL	SSON_4403	-	putative transport protein
4082	 54.30	0	4668546..4669184	-	212	74314700	msrA	SSON_4404	-	methionine sulfoxide reductase A
4083	 53.06	0	4669390..4671123	+	577	74314701	ytfM	SSON_4405	-	hypothetical protein
4084	 55.19	0	4671120..4674899	+	1259	74314702	ytfN	SSON_4406	-	hypothetical protein
4085	 51.46	0	4674902..4675243	+	113	74314703	ytfP	SSON_4407	-	hypothetical protein
4086	 51.22	0	4675622..4676152	-	176	74314704	ppa	SSON_4408	-	inorganic pyrophosphatase
4087	 50.16	0	4676462..4677418	+	318	74314705	ytfQ	SSON_4409	-	putative LACI-type transcriptional regulator
4088	 55.49	0	4677558..4679060	+	500	74314706	ytfR	SSON_4410	-	putative ATP-binding component of a transport system
4089	 57.31	+1	4679071..4680096	+	341	74314707	ytfT	SSON_4411	-	putative transport system permease protein
4090	 53.09	0	4680107..4681078	+	323	74314708	yjfF	SSON_4412	-	inner membrane ABC transporter permease protein YjfF
4091	 51.35	0	4681111..4682109	-	332	74314709	fbp	SSON_4413	-	fructose-1,6-bisphosphatase
4092	 55.31	0	4682285..4683658	+	457	74314710	yjfG	SSON_4414	-	putative ligase
4093	 52.90	0	4683741..4684292	-	183	74314711	yjgA	SSON_4415	-	hypothetical protein
4094	 53.88	0	4684386..4685738	+	450	74314712	pmbA	SSON_4416	-	peptidase PmbA
4095	 51.16	0	4686006..4686308	+	100	74314713	cybC	SSON_4417	-	cytochrome b562
4096	 50.54	0	4686353..4686817	-	154