version 1.0
Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 4071 52.51 0 4656882..4658294 + 470 74314689 cycA SSON_4393 - D-alanine/D-serine/glycine permease 4072 52.64 0 4658339..4659001 - 220 74314690 ytfE SSON_4394 - cell morphogenesis/cell wall metabolism regulator 4073 55.38 0 4659109..4660083 - 324 74314691 ytfF SSON_4395 - putative transmembrane subunit 4074 53.89 0 4660182..4661042 - 286 74314693 ytfG SSON_4397 - putative oxidoreductase 4075 52.02 0 4661041..4661511 + 156 74314692 ytfH SSON_4396 - hypothetical protein 4076 49.43 0 4661629..4663572 - 647 74314694 cpdB SSON_4398 - bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein 4077 55.06 0 4663762..4664502 + 246 74314695 cysQ SSON_4399 - PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase 4078 35.86 -2 4664714..4665625 + 303 74314696 ytfI SSON_4400 - hypothetical protein 4079 52.25 0 4665715..4666269 - 184 74314697 ytfJ SSON_4401 - hypothetical protein 4080 44.72 -1 4666555..4666800 + 81 74314698 ytfK SSON_4402 - hypothetical protein 4081 50.82 0 4666880..4668223 - 447 74314699 ytfL SSON_4403 - putative transport protein 4082 54.30 0 4668546..4669184 - 212 74314700 msrA SSON_4404 - methionine sulfoxide reductase A 4083 53.06 0 4669390..4671123 + 577 74314701 ytfM SSON_4405 - hypothetical protein 4084 55.19 0 4671120..4674899 + 1259 74314702 ytfN SSON_4406 - hypothetical protein 4085 51.46 0 4674902..4675243 + 113 74314703 ytfP SSON_4407 - hypothetical protein 4086 51.22 0 4675622..4676152 - 176 74314704 ppa SSON_4408 - inorganic pyrophosphatase 4087 50.16 0 4676462..4677418 + 318 74314705 ytfQ SSON_4409 - putative LACI-type transcriptional regulator 4088 55.49 0 4677558..4679060 + 500 74314706 ytfR SSON_4410 - putative ATP-binding component of a transport system 4089 57.31 +1 4679071..4680096 + 341 74314707 ytfT SSON_4411 - putative transport system permease protein 4090 53.09 0 4680107..4681078 + 323 74314708 yjfF SSON_4412 - inner membrane ABC transporter permease protein YjfF 4091 51.35 0 4681111..4682109 - 332 74314709 fbp SSON_4413 - fructose-1,6-bisphosphatase 4092 55.31 0 4682285..4683658 + 457 74314710 yjfG SSON_4414 - putative ligase 4093 52.90 0 4683741..4684292 - 183 74314711 yjgA SSON_4415 - hypothetical protein 4094 53.88 0 4684386..4685738 + 450 74314712 pmbA SSON_4416 - peptidase PmbA 4095 51.16 0 4686006..4686308 + 100 74314713 cybC SSON_4417 - cytochrome b562 4096 50.54 0 4686353..4686817 - 154 74314714 nrdG SSON_4418 - anaerobic ribonucleotide reductase-activating protein 4097 53.86 0 4686975..4689113 - 712 74314715 nrdD SSON_4419 - anaerobic ribonucleoside triphosphate reductase 4098 53.14 0 4689507..4691162 - 551 74314716 treC SSON_4420 - trehalose-6-phosphate hydrolase 4099 54.71 0 4691212..4692633 - 473 74314717 treB SSON_4421 - trehalose(maltose)-specific PTS system components IIBC 4100 53.80 0 4692752..4693699 - 315 74314718 treR SSON_4422 - trehalose repressor 4101 52.65 0 4694078..4696774 + 898 74314719 mgtA SSON_4423 - magnesium-transporting ATPase MgtA 4102 51.41 0 4696980..4697405 - 141 74314720 yjgF SSON_4424 - hypothetical protein 4103 48.92 0 4697439..4697900 - 153 74314721 pyrI SSON_4425 - aspartate carbamoyltransferase regulatory subunit 4104 53.74 0 4697913..4698848 - 311 74314722 pyrB SSON_4426 - aspartate carbamoyltransferase catalytic subunit 4105 50.37 0 4698852..4698986 - 44 74314723 pyrL SSON_4427 - pyrBI operon leader peptide 4106 46.97 -1 4699267..4699662 - 131 74314724 yjgH SSON_4428 - hypothetical protein 4107 54.06 0 4699793..4700506 - 237 74314725 yjgI SSON_4429 - oxidoreductase 4108 47.88 0 4700680..4700844 + 54 74314726 - SSON_4430 - hypothetical protein 4109 49.41 0 4700916..4701170 + 84 74314727 yjgJ SSON_4431 - hypothetical protein 4110 54.37 0 4701703..4702206 + 167 74314728 - SSON_4433 - IS1 ORF 4111 54.37 0 4703330..4703833 - 167 74314729 - SSON_4435 - IS1 ORF 4112 51.64 0 4705168..4706172 - 334 74314730 argI SSON_4436 - ornithine carbamoyltransferase subunit I 4113 49.16 0 4706334..4706750 + 138 74314731 yjgD SSON_4437 - hypothetical protein 4114 51.70 0 4706796..4707089 - 97 74314732 - SSON_4438 - hypothetical protein 4115 53.70 0 4707325..4707702 - 125 74314733 - SSON_4439 - IS1 ORF 4116 53.03 0 4707841..4709013 + 390 74314734 - SSON_4440 - IS21 ORF1 4117 52.63 0 4709013..4709810 + 265 74314735 - SSON_4441 - IS21 ORF2 4118 37.18 -2 4710282..4711478 + 398 74314736 yjgN SSON_4442 - hypothetical protein 4119 55.11 0 4711534..4714389 - 951 74314737 valS SSON_4443 - valyl-tRNA synthetase 4120 54.05 0 4714389..4714832 - 147 74314738 holC SSON_4444 - DNA polymerase III subunit chi 4121 54.56 0 4714966..4716477 - 503 74314739 pepA SSON_4445 - leucyl aminopeptidase 4122 54.86 0 4716744..4717844 + 366 74314740 yjgP SSON_4446 - hypothetical protein 4123 54.14 0 4717841..4718926 + 361 74314741 yjgQ SSON_4447 - hypothetical protein 4124 53.16 0 4719045..4720547 - 500 74314742 yjgR SSON_4448 - hypothetical protein 4125 47.28 -1 4720625..4721599 - 324 74314743 idnR SSON_4449 - L-idonate transcriptional regulator 4126 50.53 0 4721666..4722985 - 439 74314744 idnT SSON_4450 - L-idonate transporter 4127 49.41 0 4723050..4723814 - 254 74314745 idnO SSON_4451 - gluconate 5-dehydrogenase 4128 47.29 -1 4723838..4724869 - 343 74314746 idnD SSON_4452 - L-idonate 5-dehydrogenase 4129 43.97 -1 4725086..4725649 + 187 74314747 idnK SSON_4453 - D-gluconate kinase 4130 55.08 0 4725653..4726714 - 353 74314748 yjgB SSON_4454 - putative oxidoreductase 4131 51.96 0 4727686..4728399 - 237 74314749 - SSON_4456 - IS600 ORF2 4132 46.53 -1 4728540..4728842 - 100 74314750 - SSON_4457 - IS600 ORF1 4133 54.52 0 4729449..4730288 + 279 74314751 - SSON_4458 - IS911 ORF2 4134 53.78 0 4730804..4731571 - 255 74314752 fecE SSON_4459 - iron-dicitrate transporter ATP-binding subunit 4135 59.77 +1 4731572..4732528 - 318 74314753 fecD SSON_4460 - iron-dicitrate transporter subunit FecD 4136 60.86 +2 4732525..4733523 - 332 74314754 fecC SSON_4461 - iron-dicitrate transporter permease subunit 4137 57.54 +1 4733520..4734428 - 302 74314755 fecB SSON_4462 - iron-dicitrate transporter substrate-binding subunit 4138 58.58 +1 4734467..4736791 - 774 74314756 fecA SSON_4463 - outer membrane receptor 4139 59.01 +1 4736878..4737831 - 317 74314757 fecR SSON_4464 - fec operon regulator FecR 4140 54.41 0 4737828..4738349 - 173 74314758 fecI SSON_4465 - RNA polymerase sigma factor FecI 4141 52.54 0 4738641..4738916 + 91 74314759 insA SSON_4466 - IS1 ORF1 4142 56.12 +1 4738835..4739128 + 97 74314760 - SSON_4467 - IS1 ORF 4143 48.57 0 4739129..4739338 + 69 74314761 - SSON_4468 - IS1 ORF 4144 54.37 0 4739626..4740129 + 167 74314762 - SSON_4469 - IS1 ORF 4145 54.37 0 4741449..4741952 + 167 74314763 - SSON_4470 - IS1 ORF 4146 48.42 0 4742199..4743179 - 326 74314764 yjhS SSON_4471 - hypothetical protein 4147 43.54 -1 4743244..4744458 - 404 74314765 yjhT SSON_4472 - hypothetical protein 4148 42.84 -2 4744370..4745095 - 241 74314766 yjhA SSON_4473 - hypothetical protein 4149 52.91 0 4745945..4746976 + 343 74314767 - SSON_4474 - IS630 orf 4150 54.17 0 4747419..4747922 + 167 74314768 - SSON_4475 - IS1 ORF 4151 54.68 0 4749389..4750573 + 394 74314769 uxuA SSON_4477 - mannonate dehydratase 4152 57.22 +1 4750654..4752114 + 486 74314770 uxuB SSON_4478 - D-mannonate oxidoreductase 4153 53.10 0 4752329..4753102 + 257 74314771 uxuR SSON_4479 - DNA-binding transcriptional repressor UxuR 4154 40.07 -2 4753243..4754073 - 276 74314772 yjiC SSON_4480 - hypothetical protein 4155 54.17 0 4754214..4754717 - 167 74314773 - SSON_4481 - IS1 ORF 4156 48.19 0 4754982..4755755 + 257 74314774 - SSON_4482 - hypothetical protein 4157 57.73 +1 4755734..4756930 - 398 74314775 - SSON_4483 - ISSfl2 ORF 4158 49.37 0 4757338..4758054 + 238 74314776 - SSON_4484 - hypothetical protein 4159 55.44 0 4758132..4758986 - 284 74314777 yjiA SSON_4485 - putative GTP-binding protein YjiA 4160 50.49 0 4759099..4759302 - 67 74314778 yjiX SSON_4486 - hypothetical protein 4161 55.77 0 4759352..4761517 - 721 74314779 yjiY SSON_4487 - putative carbon starvation protein 4162 54.39 0 4761895..4762407 - 170 74314780 hpaC SSON_4488 - 4-hydroxyphenylacetate 3-monooxygenase coupling protein 4163 54.38 0 4762425..4763987 - 520 74314781 hpaB SSON_4489 - 4-hydroxyphenylacetate 3-monooxygenase 4164 52.10 0 4764928..4765641 - 237 74314782 - SSON_4490 - IS600 ORF2 4165 46.53 -1 4765782..4766084 - 100 74314783 - SSON_4491 - IS600 ORF1 4166 54.10 0 4766405..4767781 - 458 74314784 hpaX SSON_4493 - putative 4-hydroxyphenylacetate permease 4167 60.58 +2 4767956..4768744 - 262 74314785 hpaI SSON_4494 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (HHED aldolase) 4168 58.58 +1 4768755..4769558 - 267 74314786 hpaH SSON_4495 - 2-oxo-hept-3-ene-1,7-dioate hydratase 4169 54.59 0 4769669..4770049 - 126 74314787 hpaF SSON_4496 - 5-carboxymethyl-2-hydroxymuconate delta-isomerase 4170 55.16 0 4770059..4770910 - 283 74314788 hpaD SSON_4497 - homoprotocatechuate dyoxygenase 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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