IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4071	 52.51	0	4656882..4658294	+	470	74314689	cycA	SSON_4393	-	D-alanine/D-serine/glycine permease
4072	 52.64	0	4658339..4659001	-	220	74314690	ytfE	SSON_4394	-	cell morphogenesis/cell wall metabolism regulator
4073	 55.38	0	4659109..4660083	-	324	74314691	ytfF	SSON_4395	-	putative transmembrane subunit
4074	 53.89	0	4660182..4661042	-	286	74314693	ytfG	SSON_4397	-	putative oxidoreductase
4075	 52.02	0	4661041..4661511	+	156	74314692	ytfH	SSON_4396	-	hypothetical protein
4076	 49.43	0	4661629..4663572	-	647	74314694	cpdB	SSON_4398	-	bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein
4077	 55.06	0	4663762..4664502	+	246	74314695	cysQ	SSON_4399	-	PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase
4078	 35.86	-2	4664714..4665625	+	303	74314696	ytfI	SSON_4400	-	hypothetical protein
4079	 52.25	0	4665715..4666269	-	184	74314697	ytfJ	SSON_4401	-	hypothetical protein
4080	 44.72	-1	4666555..4666800	+	81	74314698	ytfK	SSON_4402	-	hypothetical protein
4081	 50.82	0	4666880..4668223	-	447	74314699	ytfL	SSON_4403	-	putative transport protein
4082	 54.30	0	4668546..4669184	-	212	74314700	msrA	SSON_4404	-	methionine sulfoxide reductase A
4083	 53.06	0	4669390..4671123	+	577	74314701	ytfM	SSON_4405	-	hypothetical protein
4084	 55.19	0	4671120..4674899	+	1259	74314702	ytfN	SSON_4406	-	hypothetical protein
4085	 51.46	0	4674902..4675243	+	113	74314703	yt