IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4063	 52.78	0	4651001..4651396	+	131	74314681	rpsF	SSON_4383	-	30S ribosomal protein S6
4064	 52.06	0	4651403..4651717	+	104	74314682	priB	SSON_4384	-	primosomal replication protein N
4065	 52.63	0	4651722..4651949	+	75	74314683	rpsR	SSON_4385	-	30S ribosomal protein S18
4066	 50.00	0	4651991..4652440	+	149	74314684	rplI	SSON_4386	-	50S ribosomal protein L9
4067	 44.55	-1	4652552..4653523	-	323	74314685	-	SSON_4387	-	putative dicarboxylate-binding periplasmic protein
4068	 54.17	0	4654009..4654512	-	167	74314686	-	SSON_4389	-	IS1 ORF
4069	 42.20	-2	4654786..4655112	+	108	74314687	ytfA	SSON_4390	-	hypothetical protein
4070	 55.11	0	4655096..4655770	-	224	74314688	ytfB	SSON_4391	-	hypothetical protein
4071	 52.51	0	4656882..4658294	+	470	74314689	cycA	SSON_4393	-	D-alanine/D-serine/glycine permease
4072	 52.64	0	4658339..4659001	-	220	74314690	ytfE	SSON_4394	-	cell morphogenesis/cell wall metabolism regulator
4073	 55.38	0	4659109..4660083	-	324	74314691	ytfF	SSON_4395	-	putative transmembrane subunit
4074	 53.89	0	4660182..4661042	-	286	74314693	ytfG	SSON_4397	-	putative oxidoreductase
4075	 52.02	0	4661041..4661511	+	156	74314692	ytfH	SSON_4396	-	hypothetical protein
4076	 49.43	0	4661629..4663572	-	647	74314694	cpdB	SSON_4398	-	bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein
4077	 55.06	0	4663762..4664502	+	246	74314695	cysQ	SSON_4399	-	PAPS (adenosine 3'-phosphate 5'