IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4055	 51.73	0	4643810..4644880	-	356	74314673	yjfR	SSON_4374	-	putative L-ascorbate 6-phosphate lactonase
4056	 51.31	0	4646643..4646948	+	101	74314674	sgaB	SSON_4376	-	L-ascorbate-specific enzyme IIB component of PTS
4057	 55.48	0	4646958..4647422	+	154	74314675	ptxA	SSON_4377	-	L-ascorbate-specific enzyme IIA component of PTS
4058	 56.07	+1	4647436..4648086	+	216	74314676	ulaD	SSON_4378	-	3-keto-L-gulonate-6-phosphate decarboxylase
4059	 57.89	+1	4648096..4648950	+	284	74314677	sgaU	SSON_4379	-	L-xylulose 5-phosphate 3-epimerase
4060	 56.91	+1	4648950..4649636	+	228	74314678	sgaE	SSON_4380	-	L-ribulose-5-phosphate 4-epimerase
4061	 46.74	-1	4649733..4650284	+	183	74314679	yagU	SSON_4381	-	hypothetical protein
4062	 46.95	-1	4650396..4650674	-	92	74314680	yjfY	SSON_4382	-	hypothetical protein
4063	 52.78	0	4651001..4651396	+	131	74314681	rpsF	SSON_4383	-	30S ribosomal protein S6
4064	 52.06	0	4651403..4651717	+	104	74314682	priB	SSON_4384	-	primosomal replication protein N
4065	 52.63	0	4651722..4651949	+	75	74314683	rpsR	SSON_4385	-	30S ribosomal protein S18
4066	 50.00	0	4651991..4652440	+	149	74314684	rplI	SSON_4386	-	50S ribosomal protein L9
4067	 44.55	-1	4652552..4653523	-	323	74314685	-	SSON_4387	-	putative dicarboxylate-binding periplasmic protein
4068	 54.17	0	4654009..4654512	-	167	74314686	-	SSON_4389	-	IS1 ORF
4069	 42.20	-2	4654786..4655112	+	108	74314687	ytfA	SSON_4390	-	hypothetical protein
4070	 55.11	0	465