IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4047	 55.74	0	4636124..4636855	+	243	74314665	yjfH	SSON_4365	-	23S rRNA (guanosine-2'-O-)-methyltransferase
4048	 54.37	0	4637175..4637678	+	167	74314666	-	SSON_4366	-	IS1 ORF
4049	 52.84	0	4638277..4639440	+	387	74314667	yjfC	SSON_4368	-	putative synthetase/amidase
4050	 54.24	0	4639509..4641149	+	546	74314668	aidB	SSON_4369	-	isovaleryl CoA dehydrogenase
4051	 51.16	0	4641266..4641568	-	100	74314669	yjfN	SSON_4370	-	hypothetical protein
4052	 48.79	0	4641690..4642019	-	109	161986381	yjfO	SSON_4371	-	hypothetical protein
4053	 53.47	0	4642201..4642950	+	249	74314671	yjfP	SSON_4372	-	esterase
4054	 50.66	0	4642947..4643702	-	251	74314672	yjfQ	SSON_4373	-	transcriptional repressor UlaR
4055	 51.73	0	4643810..4644880	-	356	74314673	yjfR	SSON_4374	-	putative L-ascorbate 6-phosphate lactonase
4056	 51.31	0	4646643..4646948	+	101	74314674	sgaB	SSON_4376	-	L-ascorbate-specific enzyme IIB component of PTS
4057	 55.48	0	4646958..4647422	+	154	74314675	ptxA	SSON_4377	-	L-ascorbate-specific enzyme IIA component of PTS
4058	 56.07	+1	4647436..4648086	+	216	74314676	ulaD	SSON_4378	-	3-keto-L-gulonate-6-phosphate decarboxylase
4059	 57.89	+1	4648096..4648950	+	284	74314677	sgaU	SSON_4379	-	L-xylulose 5-phosphate 3-epimerase
4060	 56.91	+1	4648950..4649636	+	228	74314678	sgaE	SSON_4380	-	L-ribulose-5-phosphate 4-epimerase
4061	 46.74	-1	4649733..4650284	+	183	74314679	yagU	SSON_4381	-	hypothetical protein
4062	 46.95	-1	4650396..4650674