IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4035	 51.52	0	4622433..4622894	+	153	74314653	yjeE	SSON_4353	-	putative ATPase
4036	 55.38	0	4622913..4624250	+	445	74314654	amiB	SSON_4354	-	N-acetylmuramoyl-l-alanine amidase II
4037	 56.33	+1	4624260..4626107	+	615	74314655	mutL	SSON_4355	-	DNA mismatch repair protein
4038	 53.52	0	4626100..4627050	+	316	74314656	miaA	SSON_4356	-	tRNA delta(2)-isopentenylpyrophosphate transferase
4039	 48.87	0	4627136..4627444	+	102	74314657	hfq	SSON_4357	-	RNA-binding protein Hfq
4040	 53.63	0	4627521..4628801	+	426	74314658	hflX	SSON_4358	-	putative GTPase HflX
4041	 56.19	+1	4628887..4630146	+	419	74314659	hflK	SSON_4359	-	FtsH protease regulator HflK
4042	 53.03	0	4630149..4631153	+	334	74314660	hflC	SSON_4360	-	FtsH protease regulator HflC
4043	 48.99	0	4631235..4631432	+	65	74314661	yjeT	SSON_4361	-	hypothetical protein
4044	 53.81	0	4631536..4632834	+	432	74314662	purA	SSON_4362	-	adenylosuccinate synthetase
4045	 48.83	0	4633039..4633464	+	141	74314663	yjeB	SSON_4363	-	transcriptional repressor NsrR
4046	 55.20	0	4633503..4635944	+	813	161986382	vacB	SSON_4364	-	exoribonuclease R
4047	 55.74	0	4636124..4636855	+	243	74314665	yjfH	SSON_4365	-	23S rRNA (guanosine-2'-O-)-methyltransferase
4048	 54.37	0	4637175..4637678	+	167	74314666	-	SSON_4366	-	IS1 ORF
4049	 52.84	0	4638277..4639440	+	387	74314667	yjfC	SSON_4368	-	putative synthetase/amidase
4050	 54.24	0	4639509..4641149	+	546