IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4019	 54.76	0	4602823..4602948	+	41	74314637	-	SSON_4332	-	entericidin A
4020	 47.62	0	4603059..4603205	+	48	74314638	-	SSON_4333	-	entericidin B membrane lipoprotein
4021	 53.37	0	4603694..4604227	-	177	74314639	blc	SSON_4335	-	outer membrane lipoprotein Blc
4022	 50.53	0	4604316..4605449	-	377	74314640	ampC	SSON_4336	-	beta-lactamase
4023	 53.89	0	4605512..4605871	-	119	74314641	frdD	SSON_4337	-	fumarate reductase subunit D
4024	 49.24	0	4605882..4606277	-	131	74314642	frdC	SSON_4338	-	fumarate reductase subunit C
4025	 53.20	0	4606288..4607022	-	244	74314643	frdB	SSON_4339	-	fumarate reductase iron-sulfur subunit
4026	 56.27	+1	4607015..4608823	-	602	74314644	frdA	SSON_4340	-	fumarate reductase flavoprotein subunit
4027	 52.25	0	4609148..4610125	+	325	161986385	yjeA	SSON_4341	-	lysyl-tRNA synthetase
4028	 54.37	0	4610760..4611263	+	167	74314646	-	SSON_4342	-	IS1 ORF
4029	 55.39	0	4612774..4616097	-	1107	74314647	yjeP	SSON_4344	-	hypothetical protein
4030	 53.25	0	4616119..4617087	-	322	74314648	psd	SSON_4345	-	phosphatidylserine decarboxylase
4031	 53.85	0	4617184..4618236	-	350	161986384	yjeQ	SSON_4346	-	ribosome-associated GTPase
4032	 53.66	0	4618331..4618876	+	181	161986383	yjeR	SSON_4347	-	oligoribonuclease
4033	 52.63	0	4619776..4620915	-	379	74314652	yjeS	SSON_4352	-	hypothetical protein
4034	 57.36	+1	4620914..4622461	+	515