IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4012	 48.64	0	4596422..4596715	+	97	74314630	groES	SSON_4325	-	co-chaperonin GroES
4013	 53.31	0	4596759..4598405	+	548	74314631	groEL	SSON_4326	-	chaperonin GroEL
4014	 55.30	0	4598510..4598896	+	128	74314632	yjeI	SSON_4327	-	hypothetical protein
4015	 45.96	-1	4599099..4599866	-	255	74314633	yjeJ	SSON_4328	-	hypothetical protein
4016	 54.56	0	4600133..4600636	+	167	74314634	-	SSON_4329	-	IS1 ORF
4017	 53.16	0	4601135..4602163	-	342	74314635	yjeK	SSON_4330	-	hypothetical protein
4018	 49.91	0	4602205..4602771	+	188	74314636	efp	SSON_4331	-	elongation factor P
4019	 54.76	0	4602823..4602948	+	41	74314637	-	SSON_4332	-	entericidin A
4020	 47.62	0	4603059..4603205	+	48	74314638	-	SSON_4333	-	entericidin B membrane lipoprotein
4021	 53.37	0	4603694..4604227	-	177	74314639	blc	SSON_4335	-	outer membrane lipoprotein Blc
4022	 50.53	0	4604316..4605449	-	377	74314640	ampC	SSON_4336	-	beta-lactamase
4023	 53.89	0	4605512..4605871	-	119	74314641	frdD	SSON_4337	-	fumarate reductase subunit D
4024	 49.24	0	4605882..4606277	-	131	74314642	frdC	SSON_4338	-	fumarate reductase subunit C
4025	 53.20	0	4606288..4607022	-	244	74314643	frdB	SSON_4339	-	fumarate reductase iron-sulfur subunit
4026	 56.27	+1	4607015..4608823	-	602	74314644	frdA	SSON_4340	-	fumarate reductase flavoprotein subunit
4027	 52.25	0	4609148..4610125	+	325